Analysis of interatomic Contacts of Structural Units in PDB entry:
1MOX

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 1MOX entry

There are 4 chains in PDB entry 1MOX (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LEU 1	VAL 500
B	LEU 1	SER 501
C	VAL 2	ALA 50
D	SER 3	ALA 50

There are 33 helices in PDB entry 1MOX. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	19	32	Right-handed alpha
Helix 2	2	A	52	58	Right-handed 310
Helix 3	3	A	134	138	Right-handed 310
Helix 4	4	A	139	143	Right-handed 310
Helix 5	5	A	145	150	Right-handed alpha
Helix 6	6	A	170	174	Right-handed 310
Helix 7	7	A	179	183	Right-handed 310
Helix 8	8	A	318	322	Right-handed 310
Helix 9	9	A	330	334	Right-handed 310
Helix 10	10	A	349	354	Right-handed alpha
Helix 11	11	A	355	359	Right-handed 310
Helix 12	12	A	364	374	Right-handed 310
Helix 13	13	A	393	397	Right-handed 310
Helix 14	14	A	407	410	Right-handed 310
Helix 15	15	A	447	451	Right-handed 310
Helix 16	16	A	452	457	Right-handed 310
Helix 17	17	A	471	478	Right-handed alpha
Helix 18	18	A	495	499	Right-handed 310
Helix 19	19	B	19	32	Right-handed alpha
Helix 20	20	B	52	56	Right-handed 310
Helix 21	21	B	134	138	Right-handed 310
Helix 22	22	B	159	163	Right-handed 310
Helix 23	23	B	179	183	Right-handed 310
Helix 24	24	B	318	322	Right-handed 310
Helix 25	25	B	328	333	Right-handed alpha
Helix 26	26	B	349	354	Right-handed alpha
Helix 27	27	B	364	374	Right-handed 310
Helix 28	28	B	393	397	Right-handed 310
Helix 29	29	B	407	410	Right-handed 310
Helix 30	30	B	452	456	Right-handed 310
Helix 31	31	B	471	478	Right-handed alpha
Helix 32	32	B	483	487	Right-handed 310
Helix 33	33	B	495	499	Right-handed 310

There are 21 sheets in PDB entry 1MOX. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	6	7	first strand
Strand 2	A	36	37	parallel
Strand 3	A	60	61	parallel
Strand 4	A	82	83	parallel
Strand 5	A	118	119	parallel

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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	41	44	first strand
Strand 2	A	65	68	parallel
Strand 3	A	93	98	parallel
Strand 4	A	123	127	parallel

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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	212	216	first strand
Strand 2	A	224	227	anti-parallel

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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	235	237	first strand
Strand 2	A	230	232	anti-parallel
Strand 3	A	266	268	parallel
Strand 4	A	261	263	anti-parallel

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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	244	246	first strand
Strand 2	A	253	255	anti-parallel

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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	276	277	first strand
Strand 2	A	283	284	anti-parallel

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There are 5 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	312	314	first strand
Strand 2	A	340	342	parallel
Strand 3	A	376	377	parallel
Strand 4	A	401	402	parallel
Strand 5	A	431	432	parallel

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There are 5 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	345	347	first strand
Strand 2	A	381	383	parallel
Strand 3	A	412	417	parallel
Strand 4	A	436	440	parallel
Strand 5	A	464	465	parallel

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There are 4 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	6	7	first strand
Strand 2	B	36	37	parallel
Strand 3	B	60	61	parallel
Strand 4	B	82	83	parallel

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There are 3 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	16	17	first strand
Strand 2	D	30	34	parallel
Strand 3	D	19	23	anti-parallel

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There are 4 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	41	44	first strand
Strand 2	B	65	68	parallel
Strand 3	B	93	98	parallel
Strand 4	B	123	127	parallel

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There are 2 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	212	216	first strand
Strand 2	B	224	227	anti-parallel

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There are 2 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	230	232	first strand
Strand 2	B	235	237	anti-parallel

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There are 2 strands in N sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	244	247	first strand
Strand 2	B	252	255	anti-parallel

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There are 2 strands in O sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	261	263	first strand
Strand 2	B	266	268	anti-parallel

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There are 4 strands in P sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	283	284	first strand
Strand 2	B	276	277	anti-parallel
Strand 3	B	299	304	parallel
Strand 4	B	291	296	anti-parallel

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There are 5 strands in Q sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	312	314	first strand
Strand 2	B	340	342	parallel
Strand 3	B	376	377	parallel
Strand 4	B	401	402	parallel
Strand 5	B	431	432	parallel

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There are 5 strands in R sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	345	347	first strand
Strand 2	B	381	383	parallel
Strand 3	B	412	417	parallel
Strand 4	B	436	440	parallel
Strand 5	B	464	467	parallel

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There are 3 strands in S sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	5	6	first strand
Strand 2	C	19	24	anti-parallel
Strand 3	C	29	34	anti-parallel

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There are 2 strands in T sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	38	39	first strand
Strand 2	C	45	46	anti-parallel

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There are 2 strands in U sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	38	39	first strand
Strand 2	D	45	46	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 1MOX

Analysis of interatomic Contacts of Structural Units in PDB entry:
1MOX