Analysis of interatomic Contacts of Structural Units in PDB entry:
1MPP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1MPP entry

There is 1 chain in PDB entry 1MPP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY -1ASP 332
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 11 helices in PDB entry 1MPP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
HN1
A
47 48Right-handed 310
Helix 2
HN
A
58 60Right-handed 310
Helix 3
HN2
A
111 114Right-handed alpha
Helix 4
HN3
A
126 128Right-handed 310
Helix 5
HN4
A
130 131Right-handed alpha
Helix 6
HNP
A
136 142Right-handed alpha
Helix 7
HC1
A
172 174Right-handed 310
Helix 8
HC
A
225 235Right-handed alpha
Helix 9
HC2
A
249 251Right-handed 310
Helix 10
HC3
A
271 274Right-handed 310
Helix 11
HCP
A
303 306Right-handed alpha
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There are 7 sheets in PDB entry 1MPP. Click on sheet of interest to get list of strands forming it: IN, INP, 2N, 1C, ICP, 2C, 3,

There are 8 strands in IN sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
7 9first strand
Strand 2
A
13 16anti-parallel
Strand 3
A
28 32anti-parallel
Strand 4
A
119 122parallel
Strand 5
A
39 41anti-parallel
Strand 6
A
99 104parallel
Strand 7
A
83 87anti-parallel
Strand 8
A
65 66anti-parallel
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There are 3 strands in INP sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
105 108first strand
Strand 2
A
79 82anti-parallel
Strand 3
A
70 74anti-parallel
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There are 4 strands in 2N sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
25 27first strand
Strand 2
A
17 20anti-parallel
Strand 3
A
88 91anti-parallel
Strand 4
A
94 98anti-parallel
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There are 5 strands in 1C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
191 194first strand
Strand 2
A
210 214anti-parallel
Strand 3
A
300 301parallel
Strand 4
A
221 223anti-parallel
Strand 5
A
286 288parallel
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There are 4 strands in ICP sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
275 277first strand
Strand 2
A
281 284anti-parallel
Strand 3
A
244 248anti-parallel
Strand 4
A
238 240anti-parallel
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There are 4 strands in 2C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
202 205first strand
Strand 2
A
195 199anti-parallel
Strand 3
A
257 263anti-parallel
Strand 4
A
264 270anti-parallel
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There are 6 strands in 3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2 6first strand
Strand 2
A
161 167anti-parallel
Strand 3
A
150 154anti-parallel
Strand 4
A
309 314anti-parallel
Strand 5
A
319 324anti-parallel
Strand 6
A
180 183anti-parallel
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