Analysis of interatomic Contacts of Structural Units in PDB entry:
1MTP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1MTP entry

There are 2 chains in PDB entry 1MTP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 5LEU 324
B
 THR 333ALA 367
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 11 helices in PDB entry 1MTP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
9 27Right-handed alpha
Helix 2
2
A
35 49Right-handed alpha
Helix 3
3
A
51 63Right-handed alpha
Helix 4
4
A
65 77Right-handed alpha
Helix 5
5
A
98 108Right-handed alpha
Helix 6
6
A
121 137Right-handed alpha
Helix 7
7
A
173 177Right-handed 310
Helix 8
8
A
227 231Right-handed 310
Helix 9
9
A
236 247Right-handed alpha
Helix 10
10
A
267 274Right-handed alpha
Helix 11
11
A
277 281Right-handed 310
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There are 3 sheets in PDB entry 1MTP. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
334 337first strand
Strand 2
A
248 257parallel
Strand 3
A
187 205anti-parallel
Strand 4
A
178 184anti-parallel
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There are 8 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
334 337first strand
Strand 2
A
248 257parallel
Strand 3
A
187 205anti-parallel
Strand 4
A
208 214anti-parallel
Strand 5
A
219 225anti-parallel
Strand 6
B
342 348anti-parallel
Strand 7
B
351 358anti-parallel
Strand 8
A
32 34anti-parallel
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There are 6 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
112 115first strand
Strand 2
A
83 91parallel
Strand 3
A
154 167anti-parallel
Strand 4
A
311 323anti-parallel
Strand 5
A
295 308anti-parallel
Strand 6
A
259 266anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il