Analysis of interatomic Contacts of Structural Units in PDB entry:
1MUC


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1MUC entry

There are 2 chains in PDB entry 1MUC (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 4ARG 372
B
 ALA 4ARG 372
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 28 helices in PDB entry 1MUC. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
HA1
A
63 79Right-handed alpha
Helix 2
HB1
A
86 97Right-handed alpha
Helix 3
HC1
A
101 120Right-handed alpha
Helix 4
HD1
A
123 129Right-handed alpha
Helix 5
HE1
A
146 161Right-handed alpha
Helix 6
HF1
A
174 190Right-handed alpha
Helix 7
HG1
A
204 219Right-handed alpha
Helix 8
HH1
A
231 241Right-handed alpha
Helix 9
HI1
A
254 265Right-handed alpha
Helix 10
HJ1
A
273 278Right-handed alpha
Helix 11
HJ3
A
279 294Right-handed alpha
Helix 12
HK1
A
306 319Right-handed alpha
Helix 13
HL1
A
329 334Right-handed 310
Helix 14
HM1
A
363 370Right-handed alpha
Helix 15
HA2
B
64 78Right-handed alpha
Helix 16
HB2
B
86 97Right-handed alpha
Helix 17
HC2
B
102 119Right-handed alpha
Helix 18
HD2
B
124 128Right-handed alpha
Helix 19
HE2
B
147 160Right-handed alpha
Helix 20
HF2
B
175 184Right-handed alpha
Helix 21
HG2
B
205 217Right-handed alpha
Helix 22
HH2
B
232 240Right-handed alpha
Helix 23
HI2
B
255 264Right-handed alpha
Helix 24
HJ2
B
273 278Right-handed alpha
Helix 25
HJ4
B
280 293Right-handed alpha
Helix 26
HK2
B
306 316Right-handed alpha
Helix 27
HL2
B
329 333Right-handed 310
Helix 28
HM2
B
364 369Right-handed alpha
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There are 8 sheets in PDB entry 1MUC. Click on sheet of interest to get list of strands forming it: SH1, SH3, SH5, SH7, SH2, SH4, SH6, SH8,

There are 3 strands in SH1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
5 19first strand
Strand 2
A
30 42anti-parallel
Strand 3
A
44 54anti-parallel
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There are 9 strands in SH3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
134 144first strand
Strand 2
A
164 171parallel
Strand 3
A
193 199parallel
Strand 4
A
220 227parallel
Strand 5
A
244 249parallel
Strand 6
A
268 273parallel
Strand 7
A
295 302parallel
Strand 8
A
324 328parallel
Strand 9
A
134 144parallel
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There are 2 strands in SH5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
338 341first strand
Strand 2
A
360 363anti-parallel
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There are 2 strands in SH7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
343 346first strand
Strand 2
A
349 353anti-parallel
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There are 3 strands in SH2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
8 18first strand
Strand 2
B
31 41anti-parallel
Strand 3
B
44 53anti-parallel
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There are 9 strands in SH4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
135 143first strand
Strand 2
B
165 170parallel
Strand 3
B
193 199parallel
Strand 4
B
221 225parallel
Strand 5
B
245 249parallel
Strand 6
B
269 274parallel
Strand 7
B
294 302parallel
Strand 8
B
324 327parallel
Strand 9
B
135 143parallel
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There are 2 strands in SH6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
338 341first strand
Strand 2
B
360 363anti-parallel
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There are 2 strands in SH8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
343 346first strand
Strand 2
B
349 353anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il