Analysis of interatomic Contacts of Structural Units in PDB entry:
1N0V

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 1N0V entry

There are 2 chains in PDB entry 1N0V (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
C	VAL 2	LEU 842
D	VAL 2	LEU 842

There are 71 helices in PDB entry 1N0V. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	C	5	13	Right-handed alpha
Helix 2	2	C	15	17	Right-handed 310
Helix 3	3	C	27	30	Right-handed 310
Helix 4	4	C	31	44	Right-handed alpha
Helix 5	5	C	82	87	Right-handed alpha
Helix 6	6	C	108	110	Right-handed 310
Helix 7	7	C	111	121	Right-handed alpha
Helix 8	8	C	136	149	Right-handed alpha
Helix 9	9	C	159	166	Right-handed alpha
Helix 10	10	C	170	192	Right-handed alpha
Helix 11	11	C	221	232	Right-handed alpha
Helix 12	12	C	236	244	Right-handed alpha
Helix 13	13	C	271	277	Right-handed alpha
Helix 14	14	C	277	290	Right-handed alpha
Helix 15	15	C	294	304	Right-handed alpha
Helix 16	16	C	308	314	Right-handed 310
Helix 17	17	C	315	328	Right-handed alpha
Helix 18	18	C	329	342	Right-handed alpha
Helix 19	19	C	344	357	Right-handed alpha
Helix 20	20	C	363	371	Right-handed alpha
Helix 21	21	C	459	463	Right-handed 310
Helix 22	22	C	497	499	Right-handed 310
Helix 23	23	C	500	515	Right-handed alpha
Helix 24	24	C	534	548	Right-handed alpha
Helix 25	25	C	594	603	Right-handed alpha
Helix 26	26	C	611	624	Right-handed alpha
Helix 27	27	C	626	632	Right-handed alpha
Helix 28	28	C	655	658	Right-handed 310
Helix 29	29	C	659	673	Right-handed alpha
Helix 30	30	C	696	700	Right-handed 310
Helix 31	31	C	701	719	Right-handed alpha
Helix 32	32	C	739	749	Right-handed alpha
Helix 33	33	C	775	777	Right-handed 310
Helix 34	34	C	779	787	Right-handed alpha
Helix 35	35	C	813	826	Right-handed alpha
Helix 36	36	C	834	838	Right-handed 310
Helix 37	37	D	5	15	Right-handed alpha
Helix 38	38	D	27	30	Right-handed 310
Helix 39	39	D	31	44	Right-handed alpha
Helix 40	40	D	82	88	Right-handed alpha
Helix 41	41	D	108	110	Right-handed 310
Helix 42	42	D	111	120	Right-handed alpha
Helix 43	43	D	136	149	Right-handed alpha
Helix 44	44	D	160	166	Right-handed alpha
Helix 45	45	D	170	193	Right-handed alpha
Helix 46	46	D	203	207	Right-handed 310
Helix 47	47	D	222	233	Right-handed alpha
Helix 48	48	D	236	244	Right-handed alpha
Helix 49	49	D	271	277	Right-handed alpha
Helix 50	50	D	277	289	Right-handed alpha
Helix 51	51	D	295	304	Right-handed alpha
Helix 52	52	D	308	313	Right-handed 310
Helix 53	53	D	316	328	Right-handed alpha
Helix 54	54	D	329	342	Right-handed alpha
Helix 55	55	D	344	357	Right-handed alpha
Helix 56	56	D	363	372	Right-handed alpha
Helix 57	57	D	497	499	Right-handed 310
Helix 58	58	D	500	515	Right-handed alpha
Helix 59	59	D	534	547	Right-handed alpha
Helix 60	60	D	594	603	Right-handed alpha
Helix 61	61	D	611	624	Right-handed alpha
Helix 62	62	D	626	632	Right-handed alpha
Helix 63	63	D	655	658	Right-handed 310
Helix 64	64	D	659	673	Right-handed alpha
Helix 65	65	D	696	700	Right-handed 310
Helix 66	66	D	701	719	Right-handed alpha
Helix 67	67	D	739	749	Right-handed alpha
Helix 68	68	D	775	777	Right-handed 310
Helix 69	69	D	779	789	Right-handed alpha
Helix 70	70	D	813	826	Right-handed alpha
Helix 71	71	D	834	839	Right-handed 310

There are 16 sheets in PDB entry 1N0V. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	74	80	first strand
Strand 2	C	97	103	anti-parallel
Strand 3	C	19	25	parallel
Strand 4	C	124	130	parallel
Strand 5	C	152	158	parallel
Strand 6	C	209	213	parallel
Strand 7	C	218	220	anti-parallel

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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	249	251	first strand
Strand 2	C	256	258	anti-parallel

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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	262	263	first strand
Strand 2	C	267	268	anti-parallel

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There are 8 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	441	445	first strand
Strand 2	C	433	438	anti-parallel
Strand 3	C	453	457	anti-parallel
Strand 4	C	394	402	anti-parallel
Strand 5	C	379	387	anti-parallel
Strand 6	C	467	470	anti-parallel
Strand 7	C	410	414	anti-parallel
Strand 8	C	426	430	anti-parallel

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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	404	406	first strand
Strand 2	C	447	449	anti-parallel

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There are 6 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	554	556	first strand
Strand 2	C	489	495	anti-parallel
Strand 3	C	560	561	anti-parallel
Strand 4	C	489	495	anti-parallel
Strand 5	C	528	532	anti-parallel
Strand 6	C	519	522	anti-parallel

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There are 6 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	564	567	first strand
Strand 2	C	722	736	anti-parallel
Strand 3	C	796	803	anti-parallel
Strand 4	C	722	736	anti-parallel
Strand 5	C	765	773	anti-parallel
Strand 6	C	753	759	anti-parallel

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There are 5 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	575	578	first strand
Strand 2	C	585	592	anti-parallel
Strand 3	C	684	692	anti-parallel
Strand 4	C	644	648	parallel
Strand 5	C	633	636	anti-parallel

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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	3	4	first strand
Strand 2	D	46	47	parallel

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There are 7 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	74	80	first strand
Strand 2	D	97	103	anti-parallel
Strand 3	D	19	25	parallel
Strand 4	D	124	130	parallel
Strand 5	D	152	158	parallel
Strand 6	D	209	213	parallel
Strand 7	D	218	221	anti-parallel

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There are 2 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	249	251	first strand
Strand 2	D	256	258	anti-parallel

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There are 8 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	441	444	first strand
Strand 2	D	433	438	anti-parallel
Strand 3	D	453	457	anti-parallel
Strand 4	D	394	402	anti-parallel
Strand 5	D	379	387	anti-parallel
Strand 6	D	467	470	anti-parallel
Strand 7	D	410	414	anti-parallel
Strand 8	D	426	430	anti-parallel

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There are 2 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	404	406	first strand
Strand 2	D	447	449	anti-parallel

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There are 6 strands in N sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	519	522	first strand
Strand 2	D	528	532	anti-parallel
Strand 3	D	489	495	anti-parallel
Strand 4	D	554	556	anti-parallel
Strand 5	D	489	495	anti-parallel
Strand 6	D	560	561	anti-parallel

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There are 6 strands in O sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	564	567	first strand
Strand 2	D	722	736	anti-parallel
Strand 3	D	796	803	anti-parallel
Strand 4	D	722	736	anti-parallel
Strand 5	D	765	773	anti-parallel
Strand 6	D	753	759	anti-parallel

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There are 5 strands in P sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	575	578	first strand
Strand 2	D	585	592	anti-parallel
Strand 3	D	684	692	anti-parallel
Strand 4	D	644	648	parallel
Strand 5	D	633	636	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 1N0V

Analysis of interatomic Contacts of Structural Units in PDB entry:
1N0V