Analysis of interatomic Contacts of Structural Units in PDB entry:
1N13


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1N13 entry

There are 12 chains in PDB entry 1N13 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 7SER 52
B
 ILE 54LYS 165
C
 ILE 5SER 52
D
 ILE 54LYS 165
E
 ALA 3SER 52
F
 ILE 54LYS 165
G
 PHE 12SER 52
H
 ILE 54LYS 165
I
 GLU 4SER 52
J
 ILE 54LYS 165
K
 ALA 10SER 52
L
 ILE 54LYS 165
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 13 helices in PDB entry 1N13. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
29 42Right-handed alpha
Helix 2
2
B
115 135Right-handed alpha
Helix 3
3
C
9 13Right-handed 310
Helix 4
4
C
29 42Right-handed alpha
Helix 5
5
D
115 135Right-handed alpha
Helix 6
6
E
29 42Right-handed alpha
Helix 7
7
F
115 135Right-handed alpha
Helix 8
8
G
29 42Right-handed alpha
Helix 9
9
H
115 135Right-handed alpha
Helix 10
10
I
29 42Right-handed alpha
Helix 11
11
J
115 135Right-handed alpha
Helix 12
12
K
29 42Right-handed alpha
Helix 13
13
L
115 135Right-handed alpha
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There are 12 sheets in PDB entry 1N13. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
47 50first strand
Strand 2
B
72 82parallel
Strand 3
B
154 163anti-parallel
Strand 4
A
17 26anti-parallel
Strand 5
B
60 61parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
106 112first strand
Strand 2
B
88 98anti-parallel
Strand 3
B
138 149anti-parallel
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There are 5 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
47 50first strand
Strand 2
D
72 82parallel
Strand 3
D
154 163anti-parallel
Strand 4
C
17 26anti-parallel
Strand 5
D
60 61parallel
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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
106 112first strand
Strand 2
D
88 98anti-parallel
Strand 3
D
138 149anti-parallel
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There are 5 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
47 50first strand
Strand 2
F
72 82parallel
Strand 3
F
154 163anti-parallel
Strand 4
E
17 26anti-parallel
Strand 5
F
60 61parallel
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There are 3 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
106 112first strand
Strand 2
F
88 98anti-parallel
Strand 3
F
138 149anti-parallel
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There are 5 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
G
47 50first strand
Strand 2
H
72 82parallel
Strand 3
H
154 163anti-parallel
Strand 4
G
17 26anti-parallel
Strand 5
H
60 61parallel
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There are 3 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
106 112first strand
Strand 2
H
88 98anti-parallel
Strand 3
H
138 149anti-parallel
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There are 5 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
I
47 50first strand
Strand 2
J
72 82parallel
Strand 3
J
154 163anti-parallel
Strand 4
I
17 26anti-parallel
Strand 5
J
60 61parallel
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There are 3 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
J
106 112first strand
Strand 2
J
88 98anti-parallel
Strand 3
J
138 149anti-parallel
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There are 5 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
K
47 50first strand
Strand 2
L
72 82parallel
Strand 3
L
154 163anti-parallel
Strand 4
K
17 26anti-parallel
Strand 5
L
60 61parallel
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There are 3 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
106 112first strand
Strand 2
L
88 98anti-parallel
Strand 3
L
138 149anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il