Analysis of interatomic Contacts of Structural Units in PDB entry:
1N78


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1N78 entry

There are 4 chains in PDB entry 1N78 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
C
 G 501 A 576
D
 G 501 A 576
A
 MET 1ALA 468
B
 MET 1ALA 468
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 54 helices in PDB entry 1N78. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
15 32Right-handed alpha
Helix 2
2
A
51 63Right-handed alpha
Helix 3
3
A
81 84Right-handed 310
Helix 4
4
A
85 99Right-handed alpha
Helix 5
5
A
108 120Right-handed alpha
Helix 6
6
A
124 129Right-handed 310
Helix 7
7
A
130 140Right-handed alpha
Helix 8
8
A
171 173Right-handed 310
Helix 9
9
A
186 198Right-handed alpha
Helix 10
10
A
208 211Right-handed 310
Helix 11
11
A
212 224Right-handed alpha
Helix 12
12
A
252 259Right-handed alpha
Helix 13
13
A
262 272Right-handed alpha
Helix 14
14
A
285 293Right-handed alpha
Helix 15
15
A
294 298Right-handed 310
Helix 16
16
A
306 321Right-handed alpha
Helix 17
17
A
323 338Right-handed alpha
Helix 18
18
A
344 356Right-handed alpha
Helix 19
19
A
357 359Right-handed 310
Helix 20
20
A
363 369Right-handed alpha
Helix 21
21
A
370 373Right-handed 310
Helix 22
22
A
380 390Right-handed alpha
Helix 23
23
A
390 404Right-handed alpha
Helix 24
24
A
408 423Right-handed alpha
Helix 25
25
A
427 440Right-handed alpha
Helix 26
26
A
446 454Right-handed alpha
Helix 27
27
A
454 468Right-handed alpha
Helix 28
28
B
15 32Right-handed alpha
Helix 29
29
B
51 63Right-handed alpha
Helix 30
30
B
81 84Right-handed 310
Helix 31
31
B
85 99Right-handed alpha
Helix 32
32
B
108 119Right-handed alpha
Helix 33
33
B
124 128Right-handed 310
Helix 34
34
B
130 140Right-handed alpha
Helix 35
35
B
171 173Right-handed 310
Helix 36
36
B
186 198Right-handed alpha
Helix 37
37
B
208 211Right-handed 310
Helix 38
38
B
212 224Right-handed alpha
Helix 39
39
B
252 259Right-handed alpha
Helix 40
40
B
262 272Right-handed alpha
Helix 41
41
B
285 293Right-handed alpha
Helix 42
42
B
294 298Right-handed 310
Helix 43
43
B
306 321Right-handed alpha
Helix 44
44
B
323 338Right-handed alpha
Helix 45
45
B
344 356Right-handed alpha
Helix 46
46
B
357 359Right-handed 310
Helix 47
47
B
363 369Right-handed alpha
Helix 48
48
B
370 373Right-handed 310
Helix 49
49
B
380 390Right-handed alpha
Helix 50
50
B
390 404Right-handed alpha
Helix 51
51
B
408 423Right-handed alpha
Helix 52
52
B
426 440Right-handed alpha
Helix 53
53
B
446 454Right-handed alpha
Helix 54
54
B
455 468Right-handed alpha
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There are 8 sheets in PDB entry 1N78. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
3 6first strand
Strand 2
A
35 38parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
102 105first strand
Strand 2
A
145 148anti-parallel
Strand 3
A
177 179anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
155 160first strand
Strand 2
A
164 169anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
202 206first strand
Strand 2
A
229 233parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
3 6first strand
Strand 2
B
35 38parallel
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There are 3 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
102 105first strand
Strand 2
B
145 148anti-parallel
Strand 3
B
177 179anti-parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
155 160first strand
Strand 2
B
164 169anti-parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
202 206first strand
Strand 2
B
229 233parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il