Analysis of interatomic Contacts of Structural Units in PDB entry:
1ND5


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1ND5 entry

There are 4 chains in PDB entry 1ND5 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 1THR 342
B
 LYS 1000THR 1341
C
 LYS 2000THR 2341
D
 LYS 3000THR 3341
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 65 helices in PDB entry 1ND5. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
27 31Right-handed 310
Helix 2
2
A
39 57Right-handed alpha
Helix 3
3
A
77 92Right-handed alpha
Helix 4
4
A
95 99Right-handed 310
Helix 5
5
A
115 119Right-handed 310
Helix 6
6
A
129 142Right-handed alpha
Helix 7
7
A
142 164Right-handed alpha
Helix 8
8
A
169 177Right-handed alpha
Helix 9
9
A
177 187Right-handed alpha
Helix 10
10
A
196 216Right-handed alpha
Helix 11
11
A
219 227Right-handed alpha
Helix 12
12
A
228 245Right-handed alpha
Helix 13
13
A
257 269Right-handed alpha
Helix 14
14
A
321 329Right-handed alpha
Helix 15
15
A
330 332Right-handed 310
Helix 16
16
A
335 341Right-handed alpha
Helix 17
17
B
1026 1030Right-handed 310
Helix 18
18
B
1038 1056Right-handed alpha
Helix 19
19
B
1076 1091Right-handed alpha
Helix 20
20
B
1114 1118Right-handed 310
Helix 21
21
B
1131 1140Right-handed alpha
Helix 22
22
B
1140 1148Right-handed alpha
Helix 23
23
B
1150 1162Right-handed alpha
Helix 24
24
B
1167 1175Right-handed alpha
Helix 25
25
B
1175 1185Right-handed alpha
Helix 26
26
B
1194 1214Right-handed alpha
Helix 27
27
B
1217 1225Right-handed alpha
Helix 28
28
B
1225 1243Right-handed alpha
Helix 29
29
B
1255 1266Right-handed alpha
Helix 30
30
B
1319 1327Right-handed alpha
Helix 31
31
B
1328 1330Right-handed 310
Helix 32
32
B
1333 1338Right-handed alpha
Helix 33
33
C
2026 2030Right-handed 310
Helix 34
34
C
2038 2056Right-handed alpha
Helix 35
35
C
2076 2091Right-handed alpha
Helix 36
36
C
2114 2118Right-handed 310
Helix 37
37
C
2128 2140Right-handed alpha
Helix 38
38
C
2141 2149Right-handed alpha
Helix 39
39
C
2151 2163Right-handed alpha
Helix 40
40
C
2168 2175Right-handed alpha
Helix 41
41
C
2176 2186Right-handed alpha
Helix 42
42
C
2195 2215Right-handed alpha
Helix 43
43
C
2218 2225Right-handed alpha
Helix 44
44
C
2226 2244Right-handed alpha
Helix 45
45
C
2256 2268Right-handed alpha
Helix 46
46
C
2320 2328Right-handed alpha
Helix 47
47
C
2329 2331Right-handed 310
Helix 48
48
C
2334 2339Right-handed alpha
Helix 49
49
D
3026 3030Right-handed 310
Helix 50
50
D
3038 3056Right-handed alpha
Helix 51
51
D
3076 3091Right-handed alpha
Helix 52
52
D
3094 3098Right-handed 310
Helix 53
53
D
3114 3118Right-handed 310
Helix 54
54
D
3128 3140Right-handed alpha
Helix 55
55
D
3141 3149Right-handed alpha
Helix 56
56
D
3152 3163Right-handed alpha
Helix 57
57
D
3168 3176Right-handed alpha
Helix 58
58
D
3176 3186Right-handed alpha
Helix 59
59
D
3195 3215Right-handed alpha
Helix 60
60
D
3218 3226Right-handed alpha
Helix 61
61
D
3226 3243Right-handed alpha
Helix 62
62
D
3256 3268Right-handed alpha
Helix 63
63
D
3320 3328Right-handed alpha
Helix 64
64
D
3329 3331Right-handed 310
Helix 65
65
D
3334 3340Right-handed alpha
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There are 8 sheets in PDB entry 1ND5. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
70 74first strand
Strand 2
A
251 256parallel
Strand 3
A
2 11parallel
Strand 4
A
281 288anti-parallel
Strand 5
A
293 300anti-parallel
Strand 6
A
308 310anti-parallel
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There are 6 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
70 74first strand
Strand 2
A
251 256parallel
Strand 3
A
2 11parallel
Strand 4
A
281 288anti-parallel
Strand 5
A
293 300anti-parallel
Strand 6
A
319 320anti-parallel
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There are 7 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
1111 1113first strand
Strand 2
B
1069 1074parallel
Strand 3
B
1249 1254parallel
Strand 4
B
1001 1010parallel
Strand 5
B
1279 1286anti-parallel
Strand 6
B
1291 1298anti-parallel
Strand 7
B
1306 1308anti-parallel
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There are 7 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
1111 1113first strand
Strand 2
B
1069 1074parallel
Strand 3
B
1249 1254parallel
Strand 4
B
1001 1010parallel
Strand 5
B
1279 1286anti-parallel
Strand 6
B
1291 1298anti-parallel
Strand 7
B
1316 1318anti-parallel
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There are 7 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
2111 2113first strand
Strand 2
C
2069 2074parallel
Strand 3
C
2250 2255parallel
Strand 4
C
2001 2010parallel
Strand 5
C
2280 2287anti-parallel
Strand 6
C
2292 2299anti-parallel
Strand 7
C
2307 2309anti-parallel
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There are 7 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
2111 2113first strand
Strand 2
C
2069 2074parallel
Strand 3
C
2250 2255parallel
Strand 4
C
2001 2010parallel
Strand 5
C
2280 2287anti-parallel
Strand 6
C
2292 2299anti-parallel
Strand 7
C
2318 2319anti-parallel
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There are 7 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
3111 3113first strand
Strand 2
D
3069 3074parallel
Strand 3
D
3250 3255parallel
Strand 4
D
3001 3010parallel
Strand 5
D
3280 3287anti-parallel
Strand 6
D
3292 3299anti-parallel
Strand 7
D
3307 3309anti-parallel
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There are 7 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
3111 3113first strand
Strand 2
D
3069 3074parallel
Strand 3
D
3250 3255parallel
Strand 4
D
3001 3010parallel
Strand 5
D
3280 3287anti-parallel
Strand 6
D
3292 3299anti-parallel
Strand 7
D
3318 3319anti-parallel
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