Analysis of interatomic Contacts of Structural Units in PDB entry:
1NDX


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1NDX entry

There is 1 chain in PDB entry 1NDX (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
PRO 941PRO 1206
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There is 1 helix in PDB entry 1NDX. Click on helix number for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
1
A
1129 1131Right-handed 310
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There are 6 sheets in PDB entry 1NDX. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
971 974first strand
Strand 2
A
953 958anti-parallel
Strand 3
A
945 950anti-parallel
Strand 4
A
1195 1201anti-parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
980 985first strand
Strand 2
A
991 996anti-parallel
Strand 3
A
1001 1006anti-parallel
Strand 4
A
1012 1017anti-parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
1023 1030first strand
Strand 2
A
1034 1039anti-parallel
Strand 3
A
1045 1049anti-parallel
Strand 4
A
1054 1058anti-parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
1066 1071first strand
Strand 2
A
1077 1082anti-parallel
Strand 3
A
1089 1094anti-parallel
Strand 4
A
1100 1104anti-parallel
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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
1111 1116first strand
Strand 2
A
1123 1127anti-parallel
Strand 3
A
1132 1137anti-parallel
Strand 4
A
1142 1147anti-parallel
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There are 4 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
1153 1157first strand
Strand 2
A
1162 1167anti-parallel
Strand 3
A
1172 1177anti-parallel
Strand 4
A
1182 1187anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il