Analysis of interatomic Contacts of Structural Units in PDB entry:
1NDZ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1NDZ entry

There is 1 chain in PDB entry 1NDZ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 4ARG 352
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 20 helices in PDB entry 1NDZ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
19 21Right-handed 310
Helix 2
2
A
23 35Right-handed alpha
Helix 3
3
A
44 51Right-handed alpha
Helix 4
4
A
57 73Right-handed alpha
Helix 5
5
A
75 93Right-handed alpha
Helix 6
6
A
103 108Right-handed 310
Helix 7
7
A
115 119Right-handed 310
Helix 8
8
A
125 145Right-handed alpha
Helix 9
9
A
158 160Right-handed 310
Helix 10
10
A
161 172Right-handed alpha
Helix 11
11
A
190 193Right-handed 310
Helix 12
12
A
194 207Right-handed alpha
Helix 13
13
A
220 230Right-handed alpha
Helix 14
14
A
240 244Right-handed 310
Helix 15
15
A
245 256Right-handed alpha
Helix 16
16
A
262 269Right-handed alpha
Helix 17
17
A
278 286Right-handed alpha
Helix 18
18
A
303 316Right-handed alpha
Helix 19
19
A
318 332Right-handed alpha
Helix 20
20
A
336 352Right-handed alpha
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There is 1 sheet ( A) in PDB entry 1NDZ.

There are 8 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
11 17first strand
Strand 2
A
95 102parallel
Strand 3
A
147 155parallel
Strand 4
A
177 183parallel
Strand 5
A
210 215parallel
Strand 6
A
235 238parallel
Strand 7
A
258 261parallel
Strand 8
A
289 292parallel
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