Analysis of interatomic Contacts of Structural Units in PDB entry:
1NJ2


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1NJ2 entry

There is 1 chain in PDB entry 1NJ2 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 19TYR 481
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 13 helices in PDB entry 1NJ2. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
19 31Right-handed alpha
Helix 2
2
A
47 66Right-handed alpha
Helix 3
3
A
80 84Right-handed alpha
Helix 4
4
A
118 130Right-handed alpha
Helix 5
5
A
175 198Right-handed alpha
Helix 6
6
A
241 248Right-handed alpha
Helix 7
7
A
270 280Right-handed alpha
Helix 8
8
A
307 324Right-handed alpha
Helix 9
9
A
337 349Right-handed alpha
Helix 10
10
A
357 364Right-handed alpha
Helix 11
11
A
383 409Right-handed alpha
Helix 12
12
A
416 428Right-handed alpha
Helix 13
13
A
438 450Right-handed alpha
Back to top of page

There are 6 sheets in PDB entry 1NJ2. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
34 35first strand
Strand 2
A
45 46anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
70 71first strand
Strand 2
A
138 147parallel
Strand 3
A
162 173anti-parallel
Strand 4
A
262 268anti-parallel
Strand 5
A
230 238anti-parallel
Strand 6
A
217 224anti-parallel
Strand 7
A
202 204anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
77 79first strand
Strand 2
A
107 114anti-parallel
Strand 3
A
99 102anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
250 252first strand
Strand 2
A
258 260anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
329 331first strand
Strand 2
A
297 301parallel
Strand 3
A
352 356parallel
Strand 4
A
365 369anti-parallel
Strand 5
A
376 380anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
411 413first strand
Strand 2
A
430 435parallel
Strand 3
A
473 478anti-parallel
Strand 4
A
452 458anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il