Analysis of interatomic Contacts of Structural Units in PDB entry:
1NOY


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1NOY entry

There are 3 chains in PDB entry 1NOY (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
S
 T 3 T 5
A
 ASP 2GLU 373
B
 ASP 2LEU 370
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 31 helices in PDB entry 1NOY. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
40 43Right-handed 310
Helix 2
2
A
63 76Right-handed alpha
Helix 3
3
A
81 94Right-handed 310
Helix 4
4
A
103 105Right-handed 310
Helix 5
5
A
161 165Right-handed alpha
Helix 6
6
A
168 170Right-handed 310
Helix 7
7
A
177 182Right-handed alpha
Helix 8
8
A
191 204Right-handed alpha
Helix 9
9
A
219 239Right-handed alpha
Helix 10
10
A
252 254Right-handed 310
Helix 11
11
A
270 277Right-handed alpha
Helix 12
12
A
287 295Right-handed alpha
Helix 13
13
A
306 335Right-handed 310
Helix 14
14
A
337 348Right-handed alpha
Helix 15
15
A
352 356Right-handed 310
Helix 16
16
A
358 369Right-handed alpha
Helix 17
17
B
40 42Right-handed 310
Helix 18
18
B
63 67Right-handed alpha
Helix 19
19
B
83 94Right-handed 310
Helix 20
20
B
103 105Right-handed 310
Helix 21
21
B
177 182Right-handed alpha
Helix 22
22
B
191 204Right-handed alpha
Helix 23
23
B
219 229Right-handed alpha
Helix 24
24
B
236 238Right-handed 310
Helix 25
25
B
270 277Right-handed alpha
Helix 26
26
B
287 295Right-handed alpha
Helix 27
27
B
307 313Right-handed 310
Helix 28
28
B
316 335Right-handed alpha
Helix 29
29
B
337 348Right-handed alpha
Helix 30
30
B
352 356Right-handed 310
Helix 31
31
B
358 368Right-handed alpha
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There are 6 sheets in PDB entry 1NOY. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
26 32first strand
Strand 2
A
14 20anti-parallel
Strand 3
A
4 11anti-parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
209 211first strand
Strand 2
A
108 115parallel
Strand 3
A
130 137anti-parallel
Strand 4
A
142 148anti-parallel
Strand 5
A
183 188parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
245 249first strand
Strand 2
A
258 262anti-parallel
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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
25 31first strand
Strand 2
B
14 21anti-parallel
Strand 3
B
4 11anti-parallel
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There are 5 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
209 211first strand
Strand 2
B
108 114parallel
Strand 3
B
132 137anti-parallel
Strand 4
B
142 148anti-parallel
Strand 5
B
183 188parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
245 248first strand
Strand 2
B
259 262anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il