Analysis of interatomic Contacts of Structural Units in PDB entry:
1NQY


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1NQY entry

There is 1 chain in PDB entry 1NQY (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
HIS 5GLU 190
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 6 helices in PDB entry 1NQY. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
1
A
6 13Right-handed alpha
Helix 2
2
A
78 92Right-handed alpha
Helix 3
3
A
94 98Right-handed 310
Helix 4
4
A
123 128Right-handed 310
Helix 5
5
A
143 150Right-handed alpha
Helix 6
6
A
179 190Right-handed alpha
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There are 4 sheets in PDB entry 1NQY. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
70 72first strand
Strand 2
A
34 43anti-parallel
Strand 3
A
113 122parallel
Strand 4
A
99 103anti-parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
70 72first strand
Strand 2
A
34 43anti-parallel
Strand 3
A
113 122parallel
Strand 4
A
107 109anti-parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
66 67first strand
Strand 2
A
52 55anti-parallel
Strand 3
A
136 140anti-parallel
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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
153 158first strand
Strand 2
A
164 172anti-parallel
Strand 3
A
175 178anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il