Analysis of interatomic Contacts of Structural Units in PDB entry:
1NTH


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1NTH entry

There is 1 chain in PDB entry 1NTH (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 2PHE 458
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 19 helices in PDB entry 1NTH. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
8 19Right-handed alpha
Helix 2
2
A
23 29Right-handed alpha
Helix 3
3
A
30 43Right-handed alpha
Helix 4
4
A
55 74Right-handed alpha
Helix 5
5
A
87 96Right-handed alpha
Helix 6
6
A
106 110Right-handed 310
Helix 7
7
A
136 138Right-handed 310
Helix 8
8
A
139 149Right-handed alpha
Helix 9
9
A
173 194Right-handed alpha
Helix 10
10
A
209 215Right-handed alpha
Helix 11
11
A
239 252Right-handed alpha
Helix 12
12
A
270 289Right-handed alpha
Helix 13
13
A
308 326Right-handed alpha
Helix 14
14
A
342 360Right-handed alpha
Helix 15
15
A
369 373Right-handed 310
Helix 16
16
A
379 394Right-handed alpha
Helix 17
17
A
397 411Right-handed alpha
Helix 18
18
A
424 428Right-handed alpha
Helix 19
19
A
437 455Right-handed alpha
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There are 6 sheets in PDB entry 1NTH. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
20 21first strand
Strand 2
A
82 84anti-parallel
Strand 3
A
75 77anti-parallel
Strand 4
A
237 238parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
101 104first strand
Strand 2
A
111 114anti-parallel
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There are 9 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
125 128first strand
Strand 2
A
155 157parallel
Strand 3
A
201 203parallel
Strand 4
A
227 231parallel
Strand 5
A
255 259parallel
Strand 6
A
293 296parallel
Strand 7
A
330 333parallel
Strand 8
A
363 366parallel
Strand 9
A
125 128parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
134 135first strand
Strand 2
A
160 161parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
263 264first strand
Strand 2
A
299 300parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
429 430first strand
Strand 2
A
435 436anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il