Analysis of interatomic Contacts of Structural Units in PDB entry:
1NTP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1NTP entry

There is 1 chain in PDB entry 1NTP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
ILE 16ASN 245
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 3 helices in PDB entry 1NTP. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
SHO
A
164 172Right-handed alpha
Helix 2
310
A
230 235Right-handed 310
Helix 3
TER
A
234 245Right-handed alpha
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There are 3 sheets in PDB entry 1NTP. Click on sheet of interest to get list of strands forming it: SH1, SH2, SH3,

There are 7 strands in SH1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
20 20first strand
Strand 2
A
156 161anti-parallel
Strand 3
A
136 140anti-parallel
Strand 4
A
197 201anti-parallel
Strand 5
A
204 214anti-parallel
Strand 6
A
226 231anti-parallel
Strand 7
A
179 183anti-parallel
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There are 4 strands in SH2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
43 45first strand
Strand 2
A
52 55anti-parallel
Strand 3
A
103 107anti-parallel
Strand 4
A
87 91anti-parallel
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There are 2 strands in SH3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
63 66first strand
Strand 2
A
81 85anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il