Analysis of interatomic Contacts of Structural Units in PDB entry:
1NV7


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1NV7 entry

There are 2 chains in PDB entry 1NV7 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 1009ALA 1335
B
 ASN 2009ALA 2335
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 28 helices in PDB entry 1NV7. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
1012 1024Right-handed alpha
Helix 2
2
A
1028 1049Right-handed alpha
Helix 3
3
A
1052 1057Right-handed alpha
Helix 4
4
A
1072 1087Right-handed alpha
Helix 5
5
A
1106 1108Right-handed 310
Helix 6
6
A
1122 1129Right-handed 310
Helix 7
7
A
1148 1153Right-handed 310
Helix 8
8
A
1155 1159Right-handed 310
Helix 9
9
A
1212 1216Right-handed 310
Helix 10
10
A
1220 1232Right-handed alpha
Helix 11
11
A
1247 1259Right-handed alpha
Helix 12
12
A
1280 1291Right-handed alpha
Helix 13
13
A
1301 1305Right-handed 310
Helix 14
14
A
1320 1334Right-handed alpha
Helix 15
15
B
2012 2024Right-handed alpha
Helix 16
16
B
2028 2049Right-handed alpha
Helix 17
17
B
2052 2057Right-handed alpha
Helix 18
18
B
2072 2087Right-handed alpha
Helix 19
19
B
2106 2108Right-handed 310
Helix 20
20
B
2122 2126Right-handed 310
Helix 21
21
B
2148 2153Right-handed 310
Helix 22
22
B
2155 2159Right-handed 310
Helix 23
23
B
2212 2219Right-handed 310
Helix 24
24
B
2220 2232Right-handed alpha
Helix 25
25
B
2247 2259Right-handed alpha
Helix 26
26
B
2280 2291Right-handed alpha
Helix 27
27
B
2301 2305Right-handed 310
Helix 28
28
B
2320 2335Right-handed alpha
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There are 4 sheets in PDB entry 1NV7. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 8 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1103 1104first strand
Strand 2
A
1091 1096anti-parallel
Strand 3
A
1110 1121parallel
Strand 4
A
1132 1140anti-parallel
Strand 5
A
1161 1167anti-parallel
Strand 6
A
1171 1177anti-parallel
Strand 7
A
1180 1186anti-parallel
Strand 8
A
1193 1197anti-parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1241 1242first strand
Strand 2
A
1208 1210parallel
Strand 3
A
1261 1264parallel
Strand 4
A
1316 1319anti-parallel
Strand 5
A
1294 1296anti-parallel
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There are 8 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
2103 2104first strand
Strand 2
B
2091 2096anti-parallel
Strand 3
B
2110 2121parallel
Strand 4
B
2132 2140anti-parallel
Strand 5
B
2161 2167anti-parallel
Strand 6
B
2171 2177anti-parallel
Strand 7
B
2180 2187anti-parallel
Strand 8
B
2192 2197anti-parallel
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There are 5 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
2241 2242first strand
Strand 2
B
2208 2210parallel
Strand 3
B
2261 2264parallel
Strand 4
B
2316 2319anti-parallel
Strand 5
B
2294 2296anti-parallel
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