Analysis of interatomic Contacts of Structural Units in PDB entry:
1NVF


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1NVF entry

There are 3 chains in PDB entry 1NVF (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 4LEU 391
B
 PRO 4LEU 391
C
 PRO 4LEU 391
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 53 helices in PDB entry 1NVF. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
25 34Right-handed alpha
Helix 2
2
A
45 64Right-handed alpha
Helix 3
3
A
80 84Right-handed 310
Helix 4
4
A
85 98Right-handed alpha
Helix 5
5
A
114 128Right-handed alpha
Helix 6
6
A
129 131Right-handed 310
Helix 7
7
A
140 146Right-handed alpha
Helix 8
8
A
178 183Right-handed 310
Helix 9
9
A
184 201Right-handed alpha
Helix 10
10
A
203 223Right-handed alpha
Helix 11
11
A
235 257Right-handed alpha
Helix 12
12
A
262 269Right-handed 310
Helix 13
13
A
270 282Right-handed alpha
Helix 14
14
A
286 305Right-handed alpha
Helix 15
15
A
309 323Right-handed alpha
Helix 16
16
A
331 339Right-handed alpha
Helix 17
17
A
344 352Right-handed alpha
Helix 18
18
A
383 389Right-handed alpha
Helix 19
19
B
25 34Right-handed alpha
Helix 20
20
B
45 65Right-handed alpha
Helix 21
21
B
85 99Right-handed alpha
Helix 22
22
B
114 128Right-handed alpha
Helix 23
23
B
129 131Right-handed 310
Helix 24
24
B
140 146Right-handed alpha
Helix 25
25
B
178 183Right-handed 310
Helix 26
26
B
184 201Right-handed alpha
Helix 27
27
B
203 223Right-handed alpha
Helix 28
28
B
235 257Right-handed alpha
Helix 29
29
B
262 269Right-handed 310
Helix 30
30
B
270 282Right-handed alpha
Helix 31
31
B
286 305Right-handed alpha
Helix 32
32
B
309 323Right-handed alpha
Helix 33
33
B
331 339Right-handed alpha
Helix 34
34
B
344 353Right-handed alpha
Helix 35
35
B
383 391Right-handed alpha
Helix 36
36
C
20 25Right-handed alpha
Helix 37
37
C
25 34Right-handed alpha
Helix 38
38
C
45 64Right-handed alpha
Helix 39
39
C
85 99Right-handed alpha
Helix 40
40
C
114 128Right-handed alpha
Helix 41
41
C
129 131Right-handed 310
Helix 42
42
C
140 146Right-handed alpha
Helix 43
43
C
178 183Right-handed 310
Helix 44
44
C
184 201Right-handed alpha
Helix 45
45
C
203 223Right-handed alpha
Helix 46
46
C
235 257Right-handed alpha
Helix 47
47
C
262 269Right-handed 310
Helix 48
48
C
270 282Right-handed alpha
Helix 49
49
C
286 305Right-handed alpha
Helix 50
50
C
309 323Right-handed alpha
Helix 51
51
C
331 336Right-handed alpha
Helix 52
52
C
344 353Right-handed alpha
Helix 53
53
C
383 389Right-handed alpha
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There are 12 sheets in PDB entry 1NVF. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
5 9first strand
Strand 2
A
12 18anti-parallel
Strand 3
A
172 176parallel
Strand 4
A
133 138parallel
Strand 5
A
108 113parallel
Strand 6
A
38 44parallel
Strand 7
A
71 77parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
152 157first strand
Strand 2
A
160 167anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
364 365first strand
Strand 2
A
380 381anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
368 370first strand
Strand 2
A
373 374anti-parallel
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There are 7 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
5 9first strand
Strand 2
B
12 18anti-parallel
Strand 3
B
172 176parallel
Strand 4
B
133 138parallel
Strand 5
B
108 113parallel
Strand 6
B
38 44parallel
Strand 7
B
71 77parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
152 157first strand
Strand 2
B
160 167anti-parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
364 365first strand
Strand 2
B
380 381anti-parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
368 370first strand
Strand 2
B
373 374anti-parallel
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There are 7 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
5 9first strand
Strand 2
C
12 18anti-parallel
Strand 3
C
172 176parallel
Strand 4
C
133 138parallel
Strand 5
C
108 113parallel
Strand 6
C
38 44parallel
Strand 7
C
71 77parallel
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There are 2 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
152 157first strand
Strand 2
C
160 167anti-parallel
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There are 2 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
364 365first strand
Strand 2
C
380 381anti-parallel
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There are 2 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
368 370first strand
Strand 2
C
373 374anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il