Analysis of interatomic Contacts of Structural Units in PDB entry:
1NYE


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1NYE entry

There are 6 chains in PDB entry 1NYE (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 21SER 163
B
 MET 221SER 363
C
 THR 411SER 563
D
 HIS 602SER 763
E
 GLU 813SER 963
F
 HIS 1002SER 1163
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 24 helices in PDB entry 1NYE. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
55 61Right-handed alpha
Helix 2
2
A
67 90Right-handed alpha
Helix 3
3
A
130 145Right-handed alpha
Helix 4
4
A
145 151Right-handed alpha
Helix 5
5
B
255 260Right-handed alpha
Helix 6
6
B
267 291Right-handed alpha
Helix 7
7
B
330 345Right-handed alpha
Helix 8
8
B
345 351Right-handed alpha
Helix 9
9
C
455 461Right-handed alpha
Helix 10
10
C
467 490Right-handed alpha
Helix 11
11
C
530 545Right-handed alpha
Helix 12
12
C
545 551Right-handed alpha
Helix 13
13
D
655 660Right-handed alpha
Helix 14
14
D
667 690Right-handed alpha
Helix 15
15
D
730 745Right-handed alpha
Helix 16
16
D
745 751Right-handed alpha
Helix 17
17
E
817 821Right-handed 310
Helix 18
18
E
867 891Right-handed alpha
Helix 19
19
E
930 945Right-handed alpha
Helix 20
20
E
945 951Right-handed alpha
Helix 21
21
F
1017 1020Right-handed 310
Helix 22
22
F
1067 1091Right-handed alpha
Helix 23
23
F
1130 1145Right-handed alpha
Helix 24
24
F
1145 1151Right-handed alpha
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There are 6 sheets in PDB entry 1NYE. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
52 54first strand
Strand 2
A
39 44anti-parallel
Strand 3
A
23 32anti-parallel
Strand 4
B
297 309anti-parallel
Strand 5
B
312 325anti-parallel
Strand 6
B
354 362parallel
Strand 7
F
1004 1006anti-parallel
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There are 7 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
252 254first strand
Strand 2
B
239 244anti-parallel
Strand 3
B
223 232anti-parallel
Strand 4
A
97 109anti-parallel
Strand 5
A
112 125anti-parallel
Strand 6
A
154 162parallel
Strand 7
D
604 606anti-parallel
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There are 6 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
452 454first strand
Strand 2
C
439 444anti-parallel
Strand 3
C
423 432anti-parallel
Strand 4
D
697 707anti-parallel
Strand 5
D
714 725anti-parallel
Strand 6
D
754 762parallel
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There are 6 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
554 562first strand
Strand 2
C
512 525parallel
Strand 3
C
497 509anti-parallel
Strand 4
D
623 632anti-parallel
Strand 5
D
639 644anti-parallel
Strand 6
D
652 654anti-parallel
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There are 6 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
852 853first strand
Strand 2
E
839 844anti-parallel
Strand 3
E
823 832anti-parallel
Strand 4
F
1097 1109anti-parallel
Strand 5
F
1112 1125anti-parallel
Strand 6
F
1154 1162parallel
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There are 6 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
954 962first strand
Strand 2
E
912 925parallel
Strand 3
E
897 909anti-parallel
Strand 4
F
1022 1032anti-parallel
Strand 5
F
1039 1044anti-parallel
Strand 6
F
1052 1054anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il