Analysis of interatomic Contacts of Structural Units in PDB entry:
1NYR


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1NYR entry

There are 2 chains in PDB entry 1NYR (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ILE 4ARG 645
B
 MET 1ARG 645
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 48 helices in PDB entry 1NYR. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
21 28Right-handed alpha
Helix 2
2
A
30 37Right-handed alpha
Helix 3
3
A
66 89Right-handed alpha
Helix 4
4
A
118 132Right-handed alpha
Helix 5
5
A
144 150Right-handed alpha
Helix 6
6
A
153 161Right-handed alpha
Helix 7
7
A
188 192Right-handed 310
Helix 8
8
A
224 241Right-handed alpha
Helix 9
9
A
242 250Right-handed alpha
Helix 10
10
A
267 288Right-handed alpha
Helix 11
11
A
301 308Right-handed alpha
Helix 12
12
A
308 313Right-handed alpha
Helix 13
13
A
335 345Right-handed alpha
Helix 14
14
A
349 353Right-handed 310
Helix 15
15
A
391 393Right-handed 310
Helix 16
16
A
394 413Right-handed alpha
Helix 17
17
A
436 455Right-handed alpha
Helix 18
18
A
494 499Right-handed alpha
Helix 19
19
A
524 536Right-handed alpha
Helix 20
20
A
554 571Right-handed alpha
Helix 21
21
A
584 596Right-handed alpha
Helix 22
22
A
604 610Right-handed alpha
Helix 23
23
A
628 641Right-handed alpha
Helix 24
24
B
21 30Right-handed alpha
Helix 25
25
B
30 37Right-handed alpha
Helix 26
26
B
67 75Right-handed alpha
Helix 27
27
B
77 87Right-handed alpha
Helix 28
28
B
118 132Right-handed alpha
Helix 29
29
B
188 192Right-handed 310
Helix 30
30
B
225 235Right-handed alpha
Helix 31
31
B
238 241Right-handed 310
Helix 32
32
B
242 250Right-handed alpha
Helix 33
33
B
267 288Right-handed alpha
Helix 34
34
B
301 307Right-handed alpha
Helix 35
35
B
312 317Right-handed 310
Helix 36
36
B
335 344Right-handed alpha
Helix 37
37
B
391 393Right-handed 310
Helix 38
38
B
394 414Right-handed alpha
Helix 39
39
B
438 443Right-handed alpha
Helix 40
40
B
446 451Right-handed alpha
Helix 41
41
B
493 500Right-handed alpha
Helix 42
42
B
523 536Right-handed alpha
Helix 43
43
B
540 544Right-handed 310
Helix 44
44
B
554 557Right-handed 310
Helix 45
45
B
558 571Right-handed alpha
Helix 46
46
B
584 595Right-handed alpha
Helix 47
47
B
605 610Right-handed alpha
Helix 48
48
B
628 642Right-handed alpha
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There are 18 sheets in PDB entry 1NYR. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
45 47first strand
Strand 2
A
39 42anti-parallel
Strand 3
A
61 62anti-parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
194 204first strand
Strand 2
A
213 222anti-parallel
Strand 3
A
103 109anti-parallel
Strand 4
A
93 94anti-parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
194 204first strand
Strand 2
A
213 222anti-parallel
Strand 3
A
103 109anti-parallel
Strand 4
A
99 100anti-parallel
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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
136 140first strand
Strand 2
A
170 174anti-parallel
Strand 3
A
177 180anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
253 256first strand
Strand 2
A
260 266anti-parallel
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There are 8 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
290 292first strand
Strand 2
A
355 364parallel
Strand 3
A
380 390anti-parallel
Strand 4
A
514 523anti-parallel
Strand 5
A
484 492anti-parallel
Strand 6
A
471 476anti-parallel
Strand 7
A
418 424anti-parallel
Strand 8
A
461 462parallel
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There are 3 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
298 300first strand
Strand 2
A
327 331anti-parallel
Strand 3
A
321 323anti-parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
503 504first strand
Strand 2
A
510 511anti-parallel
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There are 5 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
576 578first strand
Strand 2
A
548 552parallel
Strand 3
A
599 603parallel
Strand 4
A
612 617anti-parallel
Strand 5
A
625 627anti-parallel
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There are 3 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
6 7first strand
Strand 2
B
57 62parallel
Strand 3
B
39 42anti-parallel
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There are 2 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
107 108first strand
Strand 2
B
215 216anti-parallel
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There are 3 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
139 140first strand
Strand 2
B
170 173anti-parallel
Strand 3
B
178 179anti-parallel
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There are 2 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
194 197first strand
Strand 2
B
219 222anti-parallel
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There are 2 strands in N sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
253 254first strand
Strand 2
B
265 266anti-parallel
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There are 5 strands in O sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
291 292first strand
Strand 2
B
356 364parallel
Strand 3
B
380 390anti-parallel
Strand 4
B
514 518anti-parallel
Strand 5
B
489 492anti-parallel
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There are 3 strands in P sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
298 300first strand
Strand 2
B
327 331anti-parallel
Strand 3
B
321 323anti-parallel
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There are 3 strands in Q sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
348 349first strand
Strand 2
B
503 504parallel
Strand 3
B
510 511anti-parallel
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There are 5 strands in R sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
576 578first strand
Strand 2
B
548 552parallel
Strand 3
B
599 603parallel
Strand 4
B
612 615anti-parallel
Strand 5
B
626 627anti-parallel
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