Analysis of interatomic Contacts of Structural Units in PDB entry:
1NZB


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1NZB entry

There are 10 chains in PDB entry 1NZB (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
C
C 100 C 106
C
T 108 C 136
D
G 100 C 136
G
C 100 C 106
G
T 108 C 136
H
G 100 C 136
A
ASN 10ASP 341
B
SER 20ASP 341
E
ASP 21ASP 341
F
SER 20ASP 341
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 69 helices in PDB entry 1NZB. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
1
A
22 33Right-handed alpha
Helix 2
2
A
34 37Right-handed 310
Helix 3
3
A
38 60Right-handed alpha
Helix 4
4
A
67 81Right-handed alpha
Helix 5
5
A
84 101Right-handed alpha
Helix 6
6
A
110 127Right-handed alpha
Helix 7
7
A
138 150Right-handed alpha
Helix 8
8
A
154 171Right-handed alpha
Helix 9
9
A
173 178Right-handed alpha
Helix 10
10
A
179 180Right-handed 310
Helix 11
11
A
181 183Right-handed 310
Helix 12
12
A
214 229Right-handed alpha
Helix 13
13
A
257 274Right-handed alpha
Helix 14
14
A
289 302Right-handed alpha
Helix 15
15
A
305 314Right-handed alpha
Helix 16
16
A
318 325Right-handed alpha
Helix 17
17
A
328 332Right-handed 310
Helix 18
18
A
333 341Right-handed alpha
Helix 19
19
B
20 33Right-handed alpha
Helix 20
20
B
38 59Right-handed alpha
Helix 21
21
B
67 81Right-handed alpha
Helix 22
22
B
84 102Right-handed alpha
Helix 23
23
B
106 109Right-handed 310
Helix 24
24
B
110 127Right-handed alpha
Helix 25
25
B
138 150Right-handed alpha
Helix 26
26
B
154 171Right-handed alpha
Helix 27
27
B
173 179Right-handed alpha
Helix 28
28
B
181 185Right-handed 310
Helix 29
29
B
214 229Right-handed alpha
Helix 30
30
B
230 233Right-handed 310
Helix 31
31
B
257 274Right-handed alpha
Helix 32
32
B
289 303Right-handed alpha
Helix 33
33
B
305 313Right-handed alpha
Helix 34
34
B
334 340Right-handed alpha
Helix 35
35
E
22 33Right-handed alpha
Helix 36
36
E
38 57Right-handed alpha
Helix 37
37
E
67 82Right-handed alpha
Helix 38
38
E
84 101Right-handed alpha
Helix 39
39
E
106 109Right-handed 310
Helix 40
40
E
110 128Right-handed alpha
Helix 41
41
E
139 151Right-handed alpha
Helix 42
42
E
154 162Right-handed alpha
Helix 43
43
E
162 167Right-handed alpha
Helix 44
44
E
168 170Right-handed 310
Helix 45
45
E
173 179Right-handed alpha
Helix 46
46
E
214 228Right-handed alpha
Helix 47
47
E
257 274Right-handed alpha
Helix 48
48
E
289 303Right-handed alpha
Helix 49
49
E
305 313Right-handed alpha
Helix 50
50
E
317 325Right-handed alpha
Helix 51
51
E
333 341Right-handed alpha
Helix 52
52
F
20 33Right-handed alpha
Helix 53
53
F
34 37Right-handed 310
Helix 54
54
F
38 58Right-handed alpha
Helix 55
55
F
67 81Right-handed alpha
Helix 56
56
F
84 101Right-handed alpha
Helix 57
57
F
106 109Right-handed 310
Helix 58
58
F
110 127Right-handed alpha
Helix 59
59
F
138 150Right-handed alpha
Helix 60
60
F
154 171Right-handed alpha
Helix 61
61
F
173 178Right-handed alpha
Helix 62
62
F
179 180Right-handed 310
Helix 63
63
F
181 183Right-handed 310
Helix 64
64
F
216 228Right-handed alpha
Helix 65
65
F
257 274Right-handed alpha
Helix 66
66
F
289 302Right-handed alpha
Helix 67
67
F
305 314Right-handed alpha
Helix 68
68
F
318 324Right-handed alpha
Helix 69
69
F
334 340Right-handed alpha
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There are 6 sheets in PDB entry 1NZB. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
185 188first strand
Strand 2
A
192 196anti-parallel
Strand 3
A
210 212anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
241 242first strand
Strand 2
A
248 249anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
194 199first strand
Strand 2
B
204 212anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
242 243first strand
Strand 2
B
247 248anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
194 196first strand
Strand 2
E
210 212anti-parallel
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There are 3 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
F
185 187first strand
Strand 2
F
193 200anti-parallel
Strand 3
F
203 212anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il