Analysis of interatomic Contacts of Structural Units in PDB entry:
1O5R


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1O5R entry

There is 1 chain in PDB entry 1O5R (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
THR 4ARG 352
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 19 helices in PDB entry 1O5R. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
1
A
19 21Right-handed 310
Helix 2
2
A
23 33Right-handed alpha
Helix 3
3
A
42 51Right-handed alpha
Helix 4
4
A
57 69Right-handed alpha
Helix 5
5
A
70 72Right-handed 310
Helix 6
6
A
75 93Right-handed alpha
Helix 7
7
A
103 108Right-handed 310
Helix 8
8
A
125 145Right-handed alpha
Helix 9
9
A
161 172Right-handed alpha
Helix 10
10
A
190 193Right-handed 310
Helix 11
11
A
194 208Right-handed alpha
Helix 12
12
A
220 230Right-handed alpha
Helix 13
13
A
240 244Right-handed 310
Helix 14
14
A
245 255Right-handed alpha
Helix 15
15
A
262 269Right-handed alpha
Helix 16
16
A
278 286Right-handed alpha
Helix 17
17
A
303 316Right-handed alpha
Helix 18
18
A
318 332Right-handed alpha
Helix 19
19
A
336 352Right-handed alpha
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There is 1 sheet ( A) in PDB entry 1O5R.

There are 8 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
11 17first strand
Strand 2
A
95 102parallel
Strand 3
A
147 154parallel
Strand 4
A
177 182parallel
Strand 5
A
210 215parallel
Strand 6
A
235 238parallel
Strand 7
A
258 261parallel
Strand 8
A
290 292parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il