Analysis of interatomic Contacts of Structural Units in PDB entry:
1O6K


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1O6K entry


Note, this PDB entry contains modified residue(s) PHOSPHOTHREONINE (TPO) . This residue is treated as heterogroup (ligand) both in the PDB entry and in LPC/CSU analysis.

There are 3 chains in PDB entry 1O6K (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
LYS 146LYS 308
A
PHE 310ILE 479
C
GLY 3GLU 12
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 13 helices in PDB entry 1O6K. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
1
A
148 150Right-handed 310
Helix 2
2
A
185 191Right-handed alpha
Helix 3
3
A
193 207Right-handed alpha
Helix 4
4
A
236 245Right-handed alpha
Helix 5
5
A
248 269Right-handed alpha
Helix 6
6
A
313 317Right-handed 310
Helix 7
7
A
330 346Right-handed alpha
Helix 8
8
A
354 365Right-handed alpha
Helix 9
9
A
374 385Right-handed alpha
Helix 10
10
A
399 405Right-handed alpha
Helix 11
11
A
406 410Right-handed 310
Helix 12
12
A
413 419Right-handed alpha
Helix 13
13
A
440 445Right-handed alpha
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There are 3 sheets in PDB entry 1O6K. Click on sheet of interest to get list of strands forming it: AA, AB, AC,

There are 6 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
152 160first strand
Strand 2
A
164 171anti-parallel
Strand 3
A
177 184anti-parallel
Strand 4
A
224 230anti-parallel
Strand 5
A
215 220anti-parallel
Strand 6
A
475 476anti-parallel
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There are 2 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
281 283first strand
Strand 2
A
289 291anti-parallel
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There are 2 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
311 312first strand
Strand 2
C
10 11anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il