Analysis of interatomic Contacts of Structural Units in PDB entry:
1O7F


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1O7F entry

There is 1 chain in PDB entry 1O7F (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
ALA 13ASN 445
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 19 helices in PDB entry 1O7F. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
1
A
13 20Right-handed alpha
Helix 2
2
A
27 39Right-handed alpha
Helix 3
3
A
48 59Right-handed alpha
Helix 4
4
A
97 101Right-handed 310
Helix 5
5
A
114 120Right-handed 310
Helix 6
6
A
140 151Right-handed alpha
Helix 7
7
A
152 154Right-handed 310
Helix 8
8
A
183 200Right-handed alpha
Helix 9
9
A
201 204Right-handed 310
Helix 10
10
A
220 230Right-handed alpha
Helix 11
11
A
236 250Right-handed alpha
Helix 12
12
A
273 275Right-handed 310
Helix 13
13
A
284 293Right-handed alpha
Helix 14
14
A
294 314Right-handed alpha
Helix 15
15
A
322 334Right-handed alpha
Helix 16
16
A
335 340Right-handed 310
Helix 17
17
A
343 354Right-handed alpha
Helix 18
18
A
405 409Right-handed 310
Helix 19
19
A
432 442Right-handed alpha
Back to top of page

There are 4 sheets in PDB entry 1O7F. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD,

There are 4 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
60 64first strand
Strand 2
A
133 139anti-parallel
Strand 3
A
79 85anti-parallel
Strand 4
A
112 113anti-parallel
Back to list of sheets
Back to top of page

There are 8 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
69 71first strand
Strand 2
A
126 129anti-parallel
Strand 3
A
88 92anti-parallel
Strand 4
A
102 107anti-parallel
Strand 5
A
402 403anti-parallel
Strand 6
A
375 381anti-parallel
Strand 7
A
425 431anti-parallel
Strand 8
A
355 359anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
205 208first strand
Strand 2
A
213 219anti-parallel
Strand 3
A
268 271anti-parallel
Strand 4
A
253 255anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
365 367first strand
Strand 2
A
417 420anti-parallel
Strand 3
A
383 388anti-parallel
Strand 4
A
392 398anti-parallel
Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il