Analysis of interatomic Contacts of Structural Units in PDB entry:
1O8J


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1O8J entry

There is 1 chain in PDB entry 1O8J (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 1LYS 353
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 9 helices in PDB entry 1O8J. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
25 36Right-handed alpha
Helix 2
2
A
60 70Right-handed alpha
Helix 3
3
A
71 74Right-handed 310
Helix 4
4
A
125 129Right-handed 310
Helix 5
5
A
158 162Right-handed 310
Helix 6
6
A
287 292Right-handed alpha
Helix 7
7
A
326 334Right-handed alpha
Helix 8
8
A
335 337Right-handed 310
Helix 9
9
A
348 352Right-handed 310
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There are 4 sheets in PDB entry 1O8J. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD,

There are 10 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
19 23first strand
Strand 2
A
52 56parallel
Strand 3
A
91 95parallel
Strand 4
A
113 116parallel
Strand 5
A
141 144parallel
Strand 6
A
177 181parallel
Strand 7
A
204 208parallel
Strand 8
A
226 230parallel
Strand 9
A
249 253parallel
Strand 10
A
275 279parallel
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There are 4 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
81 85first strand
Strand 2
A
104 108parallel
Strand 3
A
133 136parallel
Strand 4
A
169 172parallel
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There are 7 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
119 121first strand
Strand 2
A
147 149parallel
Strand 3
A
184 190parallel
Strand 4
A
211 217parallel
Strand 5
A
233 237parallel
Strand 6
A
256 261parallel
Strand 7
A
294 295parallel
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There are 5 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
193 194first strand
Strand 2
A
221 223parallel
Strand 3
A
242 245parallel
Strand 4
A
264 266parallel
Strand 5
A
304 305anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il