Analysis of interatomic Contacts of Structural Units in PDB entry:
1OCR


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1OCR entry

There are 26 chains in PDB entry 1OCR (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
MET 1LYS 514
B
MET 1LEU 227
C
MET 1SER 261
D
SER 4LYS 147
E
SER 1VAL 109
F
ALA 1HIS 98
G
ALA 1LYS 84
H
LYS 7ILE 85
I
SER 1LYS 73
J
PHE 1LYS 58
K
ALA 6ARG 54
L
SER 1LYS 47
M
ILE 1SER 43
N
MET 1LYS 514
O
MET 1LEU 227
P
MET 1SER 261
Q
SER 4LYS 147
R
SER 1VAL 109
S
ALA 1HIS 98
T
ALA 1LYS 84
U
LYS 7ILE 85
V
SER 1LYS 73
W
PHE 1LYS 58
X
ALA 6ARG 54
Y
SER 1LYS 47
Z
ILE 1SER 43
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are134 helices in PDB entry 1OCR. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
1
A
2 6Right-handed alpha
Helix 2
2
A
12 41Right-handed alpha
Helix 3
3
A
51 67Right-handed alpha
Helix 4
4
A
70 75Right-handed alpha
Helix 5
5
A
77 87Right-handed alpha
Helix 6
6
A
95 116Right-handed alpha
Helix 7
7
A
141 170Right-handed alpha
Helix 8
8
A
178 180Right-handed 310
Helix 9
9
A
183 212Right-handed alpha
Helix 10
10
A
222 224Right-handed 310
Helix 11
11
A
228 262Right-handed alpha
Helix 12
12
A
270 285Right-handed alpha
Helix 13
13
A
288 291Right-handed 310
Helix 14
14
A
299 327Right-handed alpha
Helix 15
15
A
336 359Right-handed alpha
Helix 16
16
A
361 367Right-handed alpha
Helix 17
17
A
371 382Right-handed alpha
Helix 18
18
A
385 401Right-handed alpha
Helix 19
19
A
407 433Right-handed alpha
Helix 20
20
A
445 478Right-handed 310
Helix 21
21
A
488 490Right-handed 310
Helix 22
22
A
492 496Right-handed 310
Helix 23
23
B
15 45Right-handed alpha
Helix 24
24
B
60 87Right-handed alpha
Helix 25
25
B
125 127Right-handed 310
Helix 26
26
B
166 168Right-handed 310
Helix 27
27
B
216 225Right-handed alpha
Helix 28
28
C
16 37Right-handed alpha
Helix 29
29
C
41 66Right-handed alpha
Helix 30
30
C
73 106Right-handed alpha
Helix 31
31
C
110 112Right-handed 310
Helix 32
32
C
129 153Right-handed alpha
Helix 33
33
C
156 183Right-handed alpha
Helix 34
34
C
191 223Right-handed alpha
Helix 35
35
C
233 255Right-handed alpha
Helix 36
36
D
8 12Right-handed 310
Helix 37
37
D
35 45Right-handed alpha
Helix 38
38
D
48 50Right-handed 310
Helix 39
39
D
53 63Right-handed alpha
Helix 40
40
D
68 71Right-handed alpha
Helix 41
41
D
77 102Right-handed alpha
Helix 42
42
D
109 111Right-handed 310
Helix 43
43
D
113 125Right-handed alpha
Helix 44
44
D
135 137Right-handed 310
Helix 45
45
E
8 20Right-handed alpha
Helix 46
46
E
26 38Right-handed alpha
Helix 47
47
E
45 57Right-handed alpha
Helix 48
48
E
61 75Right-handed alpha
Helix 49
49
E
79 96Right-handed alpha
Helix 50
50
E
101 104Right-handed alpha
Helix 51
51
F
9 12Right-handed alpha
Helix 52
52
F
15 25Right-handed alpha
Helix 53
53
G
13 22Right-handed alpha
Helix 54
54
G
24 37Right-handed alpha
Helix 55
55
H
18 20Right-handed 310
Helix 56
56
H
26 44Right-handed alpha
Helix 57
57
H
54 63Right-handed alpha
Helix 58
58
H
66 78Right-handed alpha
Helix 59
59
I
12 38Right-handed alpha
Helix 60
60
I
40 53Right-handed alpha
Helix 61
61
I
56 65Right-handed alpha
Helix 62
62
J
5 13Right-handed alpha
Helix 63
63
J
26 54Right-handed alpha
Helix 64
64
K
9 35Right-handed alpha
Helix 65
65
L
18 44Right-handed alpha
Helix 66
66
M
12 35Right-handed alpha
Helix 67
67
M
37 41Right-handed alpha
Helix 68
68
N
2 6Right-handed alpha
Helix 69
69
N
12 41Right-handed alpha
Helix 70
70
N
51 67Right-handed alpha
Helix 71
71
N
70 75Right-handed alpha
Helix 72
72
N
77 87Right-handed alpha
Helix 73
73
N
95 116Right-handed alpha
Helix 74
74
N
141 170Right-handed alpha
Helix 75
75
N
178 180Right-handed 310
Helix 76
76
N
183 212Right-handed alpha
Helix 77
77
N
222 224Right-handed 310
Helix 78
78
N
228 262Right-handed alpha
Helix 79
79
N
270 285Right-handed alpha
Helix 80
80
N
288 291Right-handed 310
Helix 81
81
N
299 327Right-handed alpha
Helix 82
82
N
336 359Right-handed alpha
Helix 83
83
N
361 367Right-handed alpha
Helix 84
84
N
371 382Right-handed alpha
Helix 85
85
N
385 401Right-handed alpha
Helix 86
86
N
407 433Right-handed alpha
Helix 87
87
N
445 478Right-handed 310
Helix 88
88
N
488 490Right-handed 310
Helix 89
89
N
492 496Right-handed 310
Helix 90
90
O
15 45Right-handed alpha
Helix 91
91
O
60 87Right-handed alpha
Helix 92
92
O
125 127Right-handed 310
Helix 93
93
O
166 168Right-handed 310
Helix 94
94
O
216 225Right-handed alpha
Helix 95
95
P
16 37Right-handed alpha
Helix 96
96
P
41 66Right-handed alpha
Helix 97
97
P
73 106Right-handed alpha
Helix 98
98
P
110 112Right-handed 310
Helix 99
99
P
129 153Right-handed alpha
Helix 100
100
P
156 183Right-handed alpha
Helix 101
101
P
191 223Right-handed alpha
Helix 102
102
P
233 255Right-handed alpha
Helix 103
103
Q
8 12Right-handed 310
Helix 104
104
Q
35 45Right-handed alpha
Helix 105
105
Q
48 50Right-handed 310
Helix 106
106
Q
53 63Right-handed alpha
Helix 107
107
Q
68 71Right-handed alpha
Helix 108
108
Q
77 102Right-handed alpha
Helix 109
109
Q
109 111Right-handed 310
Helix 110
110
Q
113 125Right-handed alpha
Helix 111
111
Q
135 137Right-handed 310
Helix 112
112
R
8 20Right-handed alpha
Helix 113
113
R
26 38Right-handed alpha
Helix 114
114
R
45 57Right-handed alpha
Helix 115
115
R
61 75Right-handed alpha
Helix 116
116
R
79 96Right-handed alpha
Helix 117
117
R
101 104Right-handed alpha
Helix 118
118
S
9 12Right-handed alpha
Helix 119
119
S
15 25Right-handed alpha
Helix 120
120
T
13 22Right-handed alpha
Helix 121
121
T
24 37Right-handed alpha
Helix 122
122
U
18 20Right-handed 310
Helix 123
123
U
26 44Right-handed alpha
Helix 124
124
U
54 63Right-handed alpha
Helix 125
125
U
66 78Right-handed alpha
Helix 126
126
V
12 38Right-handed alpha
Helix 127
127
V
40 53Right-handed alpha
Helix 128
128
V
56 65Right-handed alpha
Helix 129
129
W
5 13Right-handed alpha
Helix 130
130
W
26 54Right-handed alpha
Helix 131
131
X
9 35Right-handed alpha
Helix 132
132
Y
18 44Right-handed alpha
Helix 133
133
Z
12 35Right-handed alpha
Helix 134
134
Z
37 41Right-handed alpha
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There are 10 sheets in PDB entry 1OCR. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
116 120first strand
Strand 2
B
105 110anti-parallel
Strand 3
B
95 102anti-parallel
Strand 4
B
150 156parallel
Strand 5
B
180 184anti-parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
142 145first strand
Strand 2
B
209 214parallel
Strand 3
B
190 194anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
161 165first strand
Strand 2
B
170 174anti-parallel
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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
F
47 51first strand
Strand 2
F
86 93parallel
Strand 3
F
80 82anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
F
55 60first strand
Strand 2
F
70 75anti-parallel
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There are 5 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
O
116 120first strand
Strand 2
O
105 110anti-parallel
Strand 3
O
95 102anti-parallel
Strand 4
O
150 156parallel
Strand 5
O
180 184anti-parallel
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There are 3 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
O
142 145first strand
Strand 2
O
209 214parallel
Strand 3
O
190 194anti-parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
O
161 165first strand
Strand 2
O
170 174anti-parallel
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There are 3 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
S
47 51first strand
Strand 2
S
86 93parallel
Strand 3
S
80 82anti-parallel
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There are 2 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
S
55 60first strand
Strand 2
S
70 75anti-parallel
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