Analysis of interatomic Contacts of Structural Units in PDB entry:
1ODK


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1ODK entry

There are 6 chains in PDB entry 1ODK (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 2VAL 235
B
 SER 2VAL 235
C
 SER 2VAL 235
D
 SER 2VAL 235
E
 SER 2VAL 235
F
 SER 2VAL 235
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 51 helices in PDB entry 1ODK. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
9 13Right-handed 310
Helix 2
2
A
22 34Right-handed alpha
Helix 3
3
A
42 46Right-handed 310
Helix 4
4
A
66 80Right-handed alpha
Helix 5
5
A
113 121Right-handed alpha
Helix 6
6
A
130 144Right-handed alpha
Helix 7
7
A
163 172Right-handed alpha
Helix 8
8
A
181 193Right-handed alpha
Helix 9
9
A
213 233Right-handed alpha
Helix 10
10
B
9 13Right-handed 310
Helix 11
11
B
22 34Right-handed alpha
Helix 12
12
B
42 46Right-handed 310
Helix 13
13
B
66 80Right-handed alpha
Helix 14
14
B
113 121Right-handed alpha
Helix 15
15
B
130 145Right-handed alpha
Helix 16
16
B
163 172Right-handed alpha
Helix 17
17
B
181 193Right-handed alpha
Helix 18
18
B
213 234Right-handed alpha
Helix 19
19
C
22 34Right-handed alpha
Helix 20
20
C
42 46Right-handed 310
Helix 21
21
C
66 81Right-handed alpha
Helix 22
22
C
113 121Right-handed alpha
Helix 23
23
C
130 144Right-handed alpha
Helix 24
24
C
163 172Right-handed alpha
Helix 25
25
C
181 192Right-handed alpha
Helix 26
26
C
212 235Right-handed alpha
Helix 27
27
D
22 34Right-handed alpha
Helix 28
28
D
42 46Right-handed 310
Helix 29
29
D
66 80Right-handed alpha
Helix 30
30
D
113 121Right-handed alpha
Helix 31
31
D
130 144Right-handed alpha
Helix 32
32
D
163 172Right-handed alpha
Helix 33
33
D
181 193Right-handed alpha
Helix 34
34
D
213 234Right-handed alpha
Helix 35
35
E
9 13Right-handed 310
Helix 36
36
E
22 34Right-handed alpha
Helix 37
37
E
42 46Right-handed 310
Helix 38
38
E
66 80Right-handed alpha
Helix 39
39
E
113 121Right-handed alpha
Helix 40
40
E
130 144Right-handed alpha
Helix 41
41
E
163 172Right-handed alpha
Helix 42
42
E
181 193Right-handed alpha
Helix 43
43
E
215 235Right-handed alpha
Helix 44
44
F
22 34Right-handed alpha
Helix 45
45
F
42 46Right-handed 310
Helix 46
46
F
66 80Right-handed alpha
Helix 47
47
F
113 121Right-handed alpha
Helix 48
48
F
130 144Right-handed alpha
Helix 49
49
F
163 172Right-handed alpha
Helix 50
50
F
181 192Right-handed alpha
Helix 51
51
F
213 234Right-handed alpha
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There are 6 sheets in PDB entry 1ODK. Click on sheet of interest to get list of strands forming it: AA, BA, CA, DA, EA, FA,

There are 11 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
16 19first strand
Strand 2
A
84 93parallel
Strand 3
A
175 179anti-parallel
Strand 4
A
148 156parallel
Strand 5
A
103 112parallel
Strand 6
A
195 205anti-parallel
Strand 7
A
84 93parallel
Strand 8
A
16 19parallel
Strand 9
A
56 61parallel
Strand 10
A
48 53anti-parallel
Strand 11
A
16 19first strand
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There are 11 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
16 20first strand
Strand 2
B
84 93parallel
Strand 3
B
175 179anti-parallel
Strand 4
B
148 156parallel
Strand 5
B
103 112parallel
Strand 6
B
195 205anti-parallel
Strand 7
B
84 93parallel
Strand 8
B
16 20parallel
Strand 9
B
56 61parallel
Strand 10
B
48 53anti-parallel
Strand 11
B
16 20first strand
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There are 22 strands in CA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
16 19first strand
Strand 2
C
84 93parallel
Strand 3
C
175 179anti-parallel
Strand 4
C
148 156parallel
Strand 5
C
103 112parallel
Strand 6
C
195 205anti-parallel
Strand 7
C
35 41first strand
Strand 8
C
48 53anti-parallel
Strand 9
C
48 53first strand
Strand 10
C
35 41anti-parallel
Strand 11
C
56 61first strand
Strand 12
C
16 19parallel
Strand 13
C
84 93parallel
Strand 14
C
16 19parallel
Strand 15
C
103 112first strand
Strand 16
C
148 156parallel
Strand 17
C
148 156first strand
Strand 18
C
103 112parallel
Strand 19
C
175 179first strand
Strand 20
C
84 93parallel
Strand 21
C
195 205parallel
Strand 22
C
84 93parallel
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There are 18 strands in DA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
16 19first strand
Strand 2
D
84 93parallel
Strand 3
D
35 41first strand
Strand 4
D
48 53anti-parallel
Strand 5
D
48 53first strand
Strand 6
D
35 41anti-parallel
Strand 7
D
56 61first strand
Strand 8
D
16 19parallel
Strand 9
D
84 93parallel
Strand 10
D
16 19parallel
Strand 11
D
103 112first strand
Strand 12
D
148 156parallel
Strand 13
D
148 156first strand
Strand 14
D
103 112parallel
Strand 15
D
175 179first strand
Strand 16
D
84 93anti-parallel
Strand 17
D
195 205parallel
Strand 18
D
84 93parallel
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There are 18 strands in EA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
16 19first strand
Strand 2
E
84 93parallel
Strand 3
E
35 41first strand
Strand 4
E
48 53anti-parallel
Strand 5
E
48 53first strand
Strand 6
E
35 41anti-parallel
Strand 7
E
56 61first strand
Strand 8
E
16 19parallel
Strand 9
E
84 93parallel
Strand 10
E
16 19parallel
Strand 11
E
103 112first strand
Strand 12
E
148 156parallel
Strand 13
E
148 156first strand
Strand 14
E
103 112parallel
Strand 15
E
175 179first strand
Strand 16
E
84 93anti-parallel
Strand 17
E
195 205parallel
Strand 18
E
84 93parallel
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There are 18 strands in FA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
16 19first strand
Strand 2
F
84 93parallel
Strand 3
F
35 41first strand
Strand 4
F
48 53anti-parallel
Strand 5
F
48 53first strand
Strand 6
F
35 41anti-parallel
Strand 7
F
56 61first strand
Strand 8
F
16 19parallel
Strand 9
F
84 93parallel
Strand 10
F
16 19parallel
Strand 11
F
103 112first strand
Strand 12
F
148 156parallel
Strand 13
F
148 156first strand
Strand 14
F
103 112parallel
Strand 15
F
175 179first strand
Strand 16
F
84 93anti-parallel
Strand 17
F
195 205parallel
Strand 18
F
84 93parallel
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