Analysis of interatomic Contacts of Structural Units in PDB entry:
1ODT


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1ODT entry

There are 2 chains in PDB entry 1ODT (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
C
 MET 1LYS 317
H
 MET 1LYS 317
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 28 helices in PDB entry 1ODT. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
C
7 12Right-handed alpha
Helix 2
2
C
23 37Right-handed alpha
Helix 3
3
C
64 66Right-handed 310
Helix 4
4
C
95 97Right-handed 310
Helix 5
5
C
98 108Right-handed alpha
Helix 6
6
C
148 166Right-handed alpha
Helix 7
7
C
181 194Right-handed alpha
Helix 8
8
C
209 217Right-handed alpha
Helix 9
9
C
222 232Right-handed alpha
Helix 10
10
C
234 247Right-handed alpha
Helix 11
11
C
249 254Right-handed alpha
Helix 12
12
C
255 257Right-handed 310
Helix 13
13
C
273 284Right-handed alpha
Helix 14
14
C
301 315Right-handed alpha
Helix 15
15
H
7 13Right-handed alpha
Helix 16
16
H
23 37Right-handed alpha
Helix 17
17
H
64 66Right-handed 310
Helix 18
18
H
95 97Right-handed 310
Helix 19
19
H
98 108Right-handed alpha
Helix 20
20
H
148 166Right-handed alpha
Helix 21
21
H
181 194Right-handed alpha
Helix 22
22
H
209 217Right-handed alpha
Helix 23
23
H
222 232Right-handed alpha
Helix 24
24
H
234 247Right-handed alpha
Helix 25
25
H
249 254Right-handed alpha
Helix 26
26
H
255 257Right-handed 310
Helix 27
27
H
273 284Right-handed alpha
Helix 28
28
H
301 315Right-handed alpha
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There are 2 sheets in PDB entry 1ODT. Click on sheet of interest to get list of strands forming it: CA, HA,

There are 9 strands in CA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
43 47first strand
Strand 2
C
54 62anti-parallel
Strand 3
C
68 76anti-parallel
Strand 4
C
111 115anti-parallel
Strand 5
C
82 88parallel
Strand 6
C
170 180parallel
Strand 7
C
199 203parallel
Strand 8
C
261 266parallel
Strand 9
C
288 293parallel
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There are 9 strands in HA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
43 47first strand
Strand 2
H
54 63anti-parallel
Strand 3
H
67 76anti-parallel
Strand 4
H
111 115anti-parallel
Strand 5
H
82 88parallel
Strand 6
H
170 180parallel
Strand 7
H
199 203parallel
Strand 8
H
261 266parallel
Strand 9
H
288 293parallel
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