Analysis of interatomic Contacts of Structural Units in PDB entry:
1OGJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1OGJ entry

There is 1 chain in PDB entry 1OGJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 9TYR 303
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 9 helices in PDB entry 1OGJ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
115 123Right-handed alpha
Helix 2
2
A
158 171Right-handed alpha
Helix 3
3
A
171 178Right-handed alpha
Helix 4
4
A
195 199Right-handed 310
Helix 5
5
A
201 212Right-handed alpha
Helix 6
6
A
235 243Right-handed alpha
Helix 7
7
A
243 252Right-handed alpha
Helix 8
8
A
266 280Right-handed alpha
Helix 9
9
A
284 295Right-handed alpha
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There are 3 sheets in PDB entry 1OGJ. Click on sheet of interest to get list of strands forming it: AA, AB, AC,

There are 6 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
77 80first strand
Strand 2
A
59 63anti-parallel
Strand 3
A
129 136anti-parallel
Strand 4
A
21 30anti-parallel
Strand 5
A
40 46anti-parallel
Strand 6
A
94 100anti-parallel
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There are 2 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
103 104first strand
Strand 2
A
113 114anti-parallel
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There are 5 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
216 222first strand
Strand 2
A
187 193parallel
Strand 3
A
149 155parallel
Strand 4
A
256 262parallel
Strand 5
A
298 302parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il