Analysis of interatomic Contacts of Structural Units in PDB entry:
1OGQ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1OGQ entry

There is 1 chain in PDB entry 1OGQ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 1THR 313
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 13 helices in PDB entry 1OGQ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
4 18Right-handed alpha
Helix 2
2
A
21 25Right-handed 310
Helix 3
3
A
69 75Right-handed 310
Helix 4
4
A
94 100Right-handed 310
Helix 5
5
A
118 124Right-handed 310
Helix 6
6
A
142 148Right-handed 310
Helix 7
7
A
166 171Right-handed 310
Helix 8
8
A
191 197Right-handed 310
Helix 9
9
A
213 217Right-handed 310
Helix 10
10
A
237 240Right-handed 310
Helix 11
11
A
261 267Right-handed 310
Helix 12
12
A
289 293Right-handed 310
Helix 13
13
A
294 298Right-handed 310
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There are 5 sheets in PDB entry 1OGQ. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, AE,

There are 11 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
41 43first strand
Strand 2
A
52 58anti-parallel
Strand 3
A
80 86parallel
Strand 4
A
105 111parallel
Strand 5
A
129 131parallel
Strand 6
A
153 155parallel
Strand 7
A
178 180parallel
Strand 8
A
201 203parallel
Strand 9
A
225 227parallel
Strand 10
A
248 250parallel
Strand 11
A
272 274parallel
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There are 2 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
66 67first strand
Strand 2
A
89 90parallel
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There are 2 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
114 116first strand
Strand 2
A
136 138parallel
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There are 4 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
162 164first strand
Strand 2
A
185 189parallel
Strand 3
A
208 211parallel
Strand 4
A
232 233parallel
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There are 3 strands in AE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
257 258first strand
Strand 2
A
279 283parallel
Strand 3
A
303 305parallel
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