Analysis of interatomic Contacts of Structural Units in PDB entry:
1OJ7


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1OJ7 entry

There are 4 chains in PDB entry 1OJ7 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
LYS -2ARG 387
B
LYS -2ARG 387
C
LYS -2ARG 387
D
LYS -2ARG 387
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 79 helices in PDB entry 1OJ7. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
1
A
17 20Right-handed 310
Helix 2
2
A
21 26Right-handed alpha
Helix 3
3
A
39 45Right-handed alpha
Helix 4
4
A
45 54Right-handed alpha
Helix 5
5
A
70 85Right-handed alpha
Helix 6
6
A
94 108Right-handed alpha
Helix 7
7
A
117 122Right-handed alpha
Helix 8
8
A
143 147Right-handed 310
Helix 9
9
A
166 169Right-handed 310
Helix 10
10
A
177 181Right-handed 310
Helix 11
11
A
184 204Right-handed alpha
Helix 12
12
A
210 234Right-handed alpha
Helix 13
13
A
237 252Right-handed alpha
Helix 14
14
A
264 278Right-handed alpha
Helix 15
15
A
280 296Right-handed alpha
Helix 16
16
A
300 313Right-handed alpha
Helix 17
17
A
318 337Right-handed alpha
Helix 18
18
A
342 347Right-handed 310
Helix 19
19
A
352 363Right-handed alpha
Helix 20
20
A
375 386Right-handed alpha
Helix 21
21
B
17 20Right-handed 310
Helix 22
22
B
21 26Right-handed alpha
Helix 23
23
B
39 44Right-handed alpha
Helix 24
24
B
45 54Right-handed alpha
Helix 25
25
B
70 85Right-handed alpha
Helix 26
26
B
94 109Right-handed alpha
Helix 27
27
B
117 122Right-handed alpha
Helix 28
28
B
143 147Right-handed 310
Helix 29
29
B
166 169Right-handed 310
Helix 30
30
B
176 181Right-handed 310
Helix 31
31
B
184 202Right-handed alpha
Helix 32
32
B
210 234Right-handed alpha
Helix 33
33
B
237 252Right-handed alpha
Helix 34
34
B
264 278Right-handed alpha
Helix 35
35
B
280 296Right-handed alpha
Helix 36
36
B
300 313Right-handed alpha
Helix 37
37
B
318 338Right-handed alpha
Helix 38
38
B
342 347Right-handed 310
Helix 39
39
B
352 363Right-handed alpha
Helix 40
40
B
375 386Right-handed alpha
Helix 41
41
C
17 25Right-handed 310
Helix 42
42
C
39 44Right-handed alpha
Helix 43
43
C
45 54Right-handed alpha
Helix 44
44
C
70 85Right-handed alpha
Helix 45
45
C
94 110Right-handed alpha
Helix 46
46
C
117 122Right-handed alpha
Helix 47
47
C
143 147Right-handed 310
Helix 48
48
C
166 169Right-handed 310
Helix 49
49
C
176 181Right-handed 310
Helix 50
50
C
184 201Right-handed alpha
Helix 51
51
C
210 234Right-handed alpha
Helix 52
52
C
237 252Right-handed alpha
Helix 53
53
C
264 278Right-handed alpha
Helix 54
54
C
280 296Right-handed alpha
Helix 55
55
C
300 313Right-handed alpha
Helix 56
56
C
318 337Right-handed alpha
Helix 57
57
C
342 347Right-handed 310
Helix 58
58
C
352 363Right-handed alpha
Helix 59
59
C
375 386Right-handed alpha
Helix 60
60
D
17 20Right-handed 310
Helix 61
61
D
21 26Right-handed alpha
Helix 62
62
D
39 45Right-handed alpha
Helix 63
63
D
45 54Right-handed alpha
Helix 64
64
D
70 84Right-handed alpha
Helix 65
65
D
94 108Right-handed alpha
Helix 66
66
D
117 122Right-handed alpha
Helix 67
67
D
143 147Right-handed 310
Helix 68
68
D
166 169Right-handed 310
Helix 69
69
D
177 181Right-handed 310
Helix 70
70
D
184 202Right-handed alpha
Helix 71
71
D
210 234Right-handed alpha
Helix 72
72
D
237 252Right-handed alpha
Helix 73
73
D
264 278Right-handed alpha
Helix 74
74
D
280 296Right-handed alpha
Helix 75
75
D
300 313Right-handed alpha
Helix 76
76
D
318 337Right-handed alpha
Helix 77
77
D
342 347Right-handed 310
Helix 78
78
D
352 363Right-handed alpha
Helix 79
79
D
375 386Right-handed alpha
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There are 6 sheets in PDB entry 1OJ7. Click on sheet of interest to get list of strands forming it: AA, AB, BA, BB, CA, A,

There are 12 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
58 62first strand
Strand 2
A
31 36parallel
Strand 3
A
88 93parallel
Strand 4
A
133 137parallel
Strand 5
A
172 175parallel
Strand 6
A
4 14parallel
Strand 7
D
4 14anti-parallel
Strand 8
D
172 175parallel
Strand 9
D
133 137parallel
Strand 10
D
88 93parallel
Strand 11
D
31 35parallel
Strand 12
D
58 62parallel
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There are 2 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
149 154first strand
Strand 2
A
159 164anti-parallel
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There are 12 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
58 62first strand
Strand 2
B
31 35parallel
Strand 3
B
88 93parallel
Strand 4
B
133 137parallel
Strand 5
B
172 175parallel
Strand 6
B
4 14parallel
Strand 7
C
4 14anti-parallel
Strand 8
C
172 175parallel
Strand 9
C
133 137parallel
Strand 10
C
88 93parallel
Strand 11
C
31 36parallel
Strand 12
C
58 62parallel
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There are 2 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
149 154first strand
Strand 2
B
159 164anti-parallel
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There are 2 strands in CA sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
149 154first strand
Strand 2
C
159 164anti-parallel
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There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
149 154first strand
Strand 2
D
159 164anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il