Analysis of interatomic Contacts of Structural Units in PDB entry:
1OLY


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1OLY entry

There are 2 chains in PDB entry 1OLY (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
MET 1SER 243
B
MET 1SER 243
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 16 helices in PDB entry 1OLY. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
1
A
8 12Right-handed 310
Helix 2
2
A
31 39Right-handed alpha
Helix 3
3
A
47 57Right-handed alpha
Helix 4
4
A
59 63Right-handed 310
Helix 5
5
A
71 75Right-handed 310
Helix 6
6
A
76 87Right-handed alpha
Helix 7
7
A
99 116Right-handed alpha
Helix 8
8
A
131 149Right-handed alpha
Helix 9
9
B
8 12Right-handed 310
Helix 10
10
B
31 39Right-handed alpha
Helix 11
11
B
47 57Right-handed alpha
Helix 12
12
B
59 63Right-handed 310
Helix 13
13
B
71 75Right-handed 310
Helix 14
14
B
76 87Right-handed alpha
Helix 15
15
B
99 116Right-handed alpha
Helix 16
16
B
131 149Right-handed alpha
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There are 4 sheets in PDB entry 1OLY. Click on sheet of interest to get list of strands forming it: AA, AB, BA, BB,

There are 5 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
3 5first strand
Strand 2
A
168 173parallel
Strand 3
A
226 231anti-parallel
Strand 4
A
192 198anti-parallel
Strand 5
A
207 209anti-parallel
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There are 10 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
89 92first strand
Strand 2
A
67 70parallel
Strand 3
A
41 45parallel
Strand 4
A
19 23parallel
Strand 5
A
121 125parallel
Strand 6
A
153 157parallel
Strand 7
A
160 165anti-parallel
Strand 8
A
235 241anti-parallel
Strand 9
A
179 186anti-parallel
Strand 10
A
216 219anti-parallel
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There are 5 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
2 5first strand
Strand 2
B
168 173parallel
Strand 3
B
226 231anti-parallel
Strand 4
B
192 198anti-parallel
Strand 5
B
207 209anti-parallel
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There are 10 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
89 92first strand
Strand 2
B
67 70parallel
Strand 3
B
41 45parallel
Strand 4
B
19 23parallel
Strand 5
B
121 125parallel
Strand 6
B
153 157parallel
Strand 7
B
160 165anti-parallel
Strand 8
B
235 241anti-parallel
Strand 9
B
179 186anti-parallel
Strand 10
B
216 219anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il