Analysis of interatomic Contacts of Structural Units in PDB entry:
1OMJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1OMJ entry

There is 1 chain in PDB entry 1OMJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 3ALA 463
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 13 helices in PDB entry 1OMJ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
5 17Right-handed alpha
Helix 2
2
A
32 40Right-handed alpha
Helix 3
3
A
69 74Right-handed 310
Helix 4
4
A
82 100Right-handed alpha
Helix 5
5
A
124 128Right-handed 310
Helix 6
6
A
152 156Right-handed 310
Helix 7
7
A
161 175Right-handed alpha
Helix 8
8
A
191 195Right-handed 310
Helix 9
9
A
211 216Right-handed 310
Helix 10
10
A
232 244Right-handed alpha
Helix 11
11
A
264 266Right-handed 310
Helix 12
12
A
377 381Right-handed 310
Helix 13
13
A
401 406Right-handed alpha
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There are 5 sheets in PDB entry 1OMJ. Click on sheet of interest to get list of strands forming it: A, B, C, D, E,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
24 25first strand
Strand 2
A
28 29anti-parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
102 106first strand
Strand 2
A
56 62parallel
Strand 3
A
115 122parallel
Strand 4
A
142 146parallel
Strand 5
A
130 132anti-parallel
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There are 11 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
268 269first strand
Strand 2
A
255 258parallel
Strand 3
A
288 290parallel
Strand 4
A
327 329parallel
Strand 5
A
345 347parallel
Strand 6
A
363 365parallel
Strand 7
A
387 389parallel
Strand 8
A
448 453parallel
Strand 9
A
433 439anti-parallel
Strand 10
A
422 428anti-parallel
Strand 11
A
411 412parallel
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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
278 280first strand
Strand 2
A
317 319parallel
Strand 3
A
307 308anti-parallel
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There are 6 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
299 301first strand
Strand 2
A
336 338parallel
Strand 3
A
354 356parallel
Strand 4
A
372 374parallel
Strand 5
A
398 400parallel
Strand 6
A
461 462parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il