Analysis of interatomic Contacts of Structural Units in PDB entry:
1ONE


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1ONE entry

There are 2 chains in PDB entry 1ONE (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 1LEU 436
B
 ALA 1LEU 436
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 40 helices in PDB entry 1ONE. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
56 58Right-handed 310
Helix 2
2
A
62 70Right-handed alpha
Helix 3
3
A
72 79Right-handed alpha
Helix 4
4
A
86 97Right-handed alpha
Helix 5
5
A
107 125Right-handed alpha
Helix 6
6
A
129 137Right-handed alpha
Helix 7
7
A
157 159Right-handed 310
Helix 8
8
A
179 201Right-handed alpha
Helix 9
9
A
203 206Right-handed 310
Helix 10
10
A
221 235Right-handed alpha
Helix 11
11
A
249 252Right-handed 310
Helix 12
12
A
269 271Right-handed 310
Helix 13
13
A
275 288Right-handed alpha
Helix 14
14
A
303 310Right-handed alpha
Helix 15
15
A
327 336Right-handed alpha
Helix 16
16
A
346 349Right-handed alpha
Helix 17
17
A
352 364Right-handed alpha
Helix 18
18
A
382 389Right-handed alpha
Helix 19
19
A
403 422Right-handed alpha
Helix 20
20
A
427 435Right-handed 310
Helix 21
21
B
56 58Right-handed 310
Helix 22
22
B
62 70Right-handed alpha
Helix 23
23
B
72 79Right-handed alpha
Helix 24
24
B
86 97Right-handed alpha
Helix 25
25
B
107 125Right-handed alpha
Helix 26
26
B
129 137Right-handed alpha
Helix 27
27
B
157 159Right-handed 310
Helix 28
28
B
179 201Right-handed alpha
Helix 29
29
B
203 206Right-handed 310
Helix 30
30
B
221 235Right-handed alpha
Helix 31
31
B
249 252Right-handed 310
Helix 32
32
B
269 271Right-handed 310
Helix 33
33
B
275 288Right-handed alpha
Helix 34
34
B
303 310Right-handed alpha
Helix 35
35
B
327 336Right-handed alpha
Helix 36
36
B
346 349Right-handed alpha
Helix 37
37
B
352 364Right-handed alpha
Helix 38
38
B
382 389Right-handed alpha
Helix 39
39
B
403 422Right-handed alpha
Helix 40
40
B
427 435Right-handed 310
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There are 8 sheets in PDB entry 1ONE. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
4 11first strand
Strand 2
A
17 25anti-parallel
Strand 3
A
28 33anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
144 146first strand
Strand 2
A
423 425parallel
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There are 6 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
394 396first strand
Strand 2
A
148 155parallel
Strand 3
A
168 172anti-parallel
Strand 4
A
242 246anti-parallel
Strand 5
A
291 295parallel
Strand 6
A
316 318parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
341 344first strand
Strand 2
A
368 371parallel
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There are 3 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
4 11first strand
Strand 2
B
17 25anti-parallel
Strand 3
B
28 33anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
144 146first strand
Strand 2
B
423 425parallel
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There are 6 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
394 396first strand
Strand 2
B
148 155parallel
Strand 3
B
168 172anti-parallel
Strand 4
B
242 246anti-parallel
Strand 5
B
291 295parallel
Strand 6
B
316 318parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
341 344first strand
Strand 2
B
368 371parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il