Analysis of interatomic Contacts of Structural Units in PDB entry:
1OX4


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1OX4 entry

There are 3 chains in PDB entry 1OX4 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
GLY -3ASP 550
B
GLY -3ILE 82
B
VAL 84ASP 550
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 48 helices in PDB entry 1OX4. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
1
A
15 23Right-handed alpha
Helix 2
2
A
34 36Right-handed 310
Helix 3
3
A
53 63Right-handed alpha
Helix 4
4
A
65 75Right-handed alpha
Helix 5
5
A
84 89Right-handed alpha
Helix 6
6
A
94 96Right-handed 310
Helix 7
7
A
155 163Right-handed alpha
Helix 8
8
A
194 196Right-handed 310
Helix 9
9
A
198 209Right-handed alpha
Helix 10
10
A
221 227Right-handed alpha
Helix 11
11
A
232 235Right-handed 310
Helix 12
12
A
277 288Right-handed alpha
Helix 13
13
A
307 309Right-handed 310
Helix 14
14
A
311 321Right-handed alpha
Helix 15
15
A
346 356Right-handed alpha
Helix 16
16
A
365 376Right-handed alpha
Helix 17
17
A
386 394Right-handed alpha
Helix 18
18
A
396 398Right-handed 310
Helix 19
19
A
413 415Right-handed 310
Helix 20
20
A
451 461Right-handed alpha
Helix 21
21
A
482 491Right-handed alpha
Helix 22
22
A
505 514Right-handed alpha
Helix 23
23
A
524 527Right-handed alpha
Helix 24
24
A
533 543Right-handed alpha
Helix 25
25
B
15 23Right-handed alpha
Helix 26
26
B
34 36Right-handed 310
Helix 27
27
B
53 63Right-handed alpha
Helix 28
28
B
65 75Right-handed alpha
Helix 29
29
B
87 89Right-handed 310
Helix 30
30
B
94 96Right-handed 310
Helix 31
31
B
155 163Right-handed alpha
Helix 32
32
B
194 196Right-handed 310
Helix 33
33
B
198 209Right-handed alpha
Helix 34
34
B
221 227Right-handed alpha
Helix 35
35
B
232 235Right-handed 310
Helix 36
36
B
277 288Right-handed alpha
Helix 37
37
B
307 309Right-handed 310
Helix 38
38
B
311 321Right-handed alpha
Helix 39
39
B
346 356Right-handed alpha
Helix 40
40
B
365 376Right-handed alpha
Helix 41
41
B
386 394Right-handed alpha
Helix 42
42
B
396 398Right-handed 310
Helix 43
43
B
413 415Right-handed 310
Helix 44
44
B
451 461Right-handed alpha
Helix 45
45
B
482 491Right-handed alpha
Helix 46
46
B
505 514Right-handed alpha
Helix 47
47
B
524 527Right-handed alpha
Helix 48
48
B
533 543Right-handed alpha
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There are 10 sheets in PDB entry 1OX4. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
3 7first strand
Strand 2
A
27 31parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
45 49first strand
Strand 2
A
79 82parallel
Strand 3
A
187 190parallel
Strand 4
A
176 184anti-parallel
Strand 5
A
167 173anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
121 125first strand
Strand 2
A
143 147anti-parallel
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There are 8 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
519 522first strand
Strand 2
A
239 246parallel
Strand 3
A
293 298parallel
Strand 4
A
326 330parallel
Strand 5
A
360 363parallel
Strand 6
A
399 405parallel
Strand 7
A
465 470parallel
Strand 8
A
495 498parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
405 410first strand
Strand 2
A
433 438anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
3 7first strand
Strand 2
B
27 31parallel
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There are 5 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
45 48first strand
Strand 2
B
79 82parallel
Strand 3
B
187 190parallel
Strand 4
B
176 184anti-parallel
Strand 5
B
167 173anti-parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
121 125first strand
Strand 2
B
143 147anti-parallel
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There are 8 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
519 522first strand
Strand 2
B
239 246parallel
Strand 3
B
293 298parallel
Strand 4
B
326 330parallel
Strand 5
B
360 363parallel
Strand 6
B
399 405parallel
Strand 7
B
465 470parallel
Strand 8
B
495 498parallel
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There are 2 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
405 410first strand
Strand 2
B
433 438anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il