Analysis of interatomic Contacts of Structural Units in PDB entry:
1OXX


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1OXX entry

There is 1 chain in PDB entry 1OXX (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
K
 MET 1LYS 352
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 16 helices in PDB entry 1OXX. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
K
14 17Right-handed 310
Helix 2
2
K
40 53Right-handed alpha
Helix 3
3
K
78 82Right-handed 310
Helix 4
4
K
98 105Right-handed alpha
Helix 5
5
K
106 108Right-handed 310
Helix 6
6
K
113 128Right-handed alpha
Helix 7
7
K
130 134Right-handed 310
Helix 8
8
K
137 141Right-handed 310
Helix 9
9
K
142 156Right-handed alpha
Helix 10
10
K
172 174Right-handed 310
Helix 11
11
K
175 191Right-handed alpha
Helix 12
12
K
200 208Right-handed alpha
Helix 13
13
K
224 231Right-handed alpha
Helix 14
14
K
234 242Right-handed alpha
Helix 15
15
K
277 279Right-handed 310
Helix 16
16
K
344 347Right-handed 310
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There are 4 sheets in PDB entry 1OXX. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
K
18 28first strand
Strand 2
K
4 13anti-parallel
Strand 3
K
59 64anti-parallel
Strand 4
K
67 71anti-parallel
Strand 5
K
74 75anti-parallel
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There are 6 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
K
84 88first strand
Strand 2
K
161 165parallel
Strand 3
K
193 198parallel
Strand 4
K
33 37parallel
Strand 5
K
210 215parallel
Strand 6
K
218 223anti-parallel
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There are 5 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
K
261 263first strand
Strand 2
K
255 258anti-parallel
Strand 3
K
245 252anti-parallel
Strand 4
K
271 276anti-parallel
Strand 5
K
348 351anti-parallel
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There are 5 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
K
281 284first strand
Strand 2
K
337 342anti-parallel
Strand 3
K
294 307anti-parallel
Strand 4
K
310 317anti-parallel
Strand 5
K
324 328anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il