Analysis of interatomic Contacts of Structural Units in PDB entry:
1OY6


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1OY6 entry

There is 1 chain in PDB entry 1OY6 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
ASP 7LYS 1036
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 43 helices in PDB entry 1OY6. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
1
A
9 27Right-handed alpha
Helix 2
2
A
53 61Right-handed alpha
Helix 3
3
A
61 68Right-handed alpha
Helix 4
4
A
99 112Right-handed alpha
Helix 5
5
A
114 118Right-handed 310
Helix 6
6
A
119 124Right-handed alpha
Helix 7
7
A
152 160Right-handed alpha
Helix 8
8
A
162 167Right-handed alpha
Helix 9
9
A
189 196Right-handed alpha
Helix 10
10
A
199 211Right-handed alpha
Helix 11
11
A
242 248Right-handed alpha
Helix 12
12
A
262 265Right-handed alpha
Helix 13
13
A
299 312Right-handed alpha
Helix 14
14
A
313 317Right-handed 310
Helix 15
15
A
329 359Right-handed alpha
Helix 16
16
A
371 385Right-handed alpha
Helix 17
17
A
391 423Right-handed alpha
Helix 18
18
A
427 454Right-handed alpha
Helix 19
19
A
460 462Right-handed 310
Helix 20
20
A
463 485Right-handed alpha
Helix 21
21
A
487 496Right-handed alpha
Helix 22
22
A
513 525Right-handed alpha
Helix 23
23
A
525 537Right-handed alpha
Helix 24
24
A
538 558Right-handed alpha
Helix 25
25
A
583 601Right-handed alpha
Helix 26
26
A
643 658Right-handed alpha
Helix 27
27
A
691 709Right-handed alpha
Helix 28
28
A
732 740Right-handed alpha
Helix 29
29
A
742 755Right-handed alpha
Helix 30
30
A
776 780Right-handed 310
Helix 31
31
A
782 787Right-handed 310
Helix 32
32
A
801 805Right-handed alpha
Helix 33
33
A
819 822Right-handed 310
Helix 34
34
A
836 849Right-handed alpha
Helix 35
35
A
871 888Right-handed alpha
Helix 36
36
A
896 901Right-handed alpha
Helix 37
37
A
903 919Right-handed alpha
Helix 38
38
A
924 952Right-handed alpha
Helix 39
39
A
961 970Right-handed alpha
Helix 40
40
A
971 986Right-handed alpha
Helix 41
41
A
986 991Right-handed alpha
Helix 42
42
A
998 1019Right-handed alpha
Helix 43
43
A
1025 1033Right-handed alpha
Back to top of page

There are 12 sheets in PDB entry 1OY6. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
77 79first strand
Strand 2
A
87 93anti-parallel
Strand 3
A
42 48anti-parallel
Strand 4
A
128 131anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
81 83first strand
Strand 2
A
815 817anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
172 174first strand
Strand 2
A
289 293anti-parallel
Strand 3
A
136 144anti-parallel
Strand 4
A
321 324anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
266 272first strand
Strand 2
A
182 188anti-parallel
Strand 3
A
767 773parallel
Strand 4
A
758 764anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
218 219first strand
Strand 2
A
232 233anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
250 254first strand
Strand 2
A
258 261anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
284 286first strand
Strand 2
A
278 281anti-parallel
Strand 3
A
611 613anti-parallel
Strand 4
A
624 628anti-parallel
Strand 5
A
572 577anti-parallel
Strand 6
A
662 663anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
284 286first strand
Strand 2
A
278 281anti-parallel
Strand 3
A
611 613anti-parallel
Strand 4
A
624 628anti-parallel
Strand 5
A
572 577anti-parallel
Strand 6
A
666 667anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
606 608first strand
Strand 2
A
630 631anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
682 685first strand
Strand 2
A
824 830anti-parallel
Strand 3
A
715 718anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
725 729first strand
Strand 2
A
807 811anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
790 793first strand
Strand 2
A
797 800anti-parallel
Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il