Analysis of interatomic Contacts of Structural Units in PDB entry:
1OY8


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1OY8 entry

There is 1 chain in PDB entry 1OY8 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 7LYS 1036
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 43 helices in PDB entry 1OY8. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
8 28Right-handed alpha
Helix 2
2
A
53 61Right-handed alpha
Helix 3
3
A
61 68Right-handed alpha
Helix 4
4
A
99 112Right-handed alpha
Helix 5
5
A
113 118Right-handed 310
Helix 6
6
A
119 124Right-handed alpha
Helix 7
7
A
152 160Right-handed alpha
Helix 8
8
A
162 167Right-handed alpha
Helix 9
9
A
189 195Right-handed alpha
Helix 10
10
A
199 211Right-handed alpha
Helix 11
11
A
242 248Right-handed alpha
Helix 12
12
A
262 265Right-handed alpha
Helix 13
13
A
299 304Right-handed alpha
Helix 14
14
A
329 359Right-handed alpha
Helix 15
15
A
371 387Right-handed alpha
Helix 16
16
A
391 423Right-handed alpha
Helix 17
17
A
427 434Right-handed alpha
Helix 18
18
A
434 450Right-handed alpha
Helix 19
19
A
460 462Right-handed 310
Helix 20
20
A
463 485Right-handed alpha
Helix 21
21
A
487 496Right-handed alpha
Helix 22
22
A
513 525Right-handed alpha
Helix 23
23
A
525 537Right-handed alpha
Helix 24
24
A
538 558Right-handed alpha
Helix 25
25
A
583 600Right-handed alpha
Helix 26
26
A
633 637Right-handed 310
Helix 27
27
A
643 656Right-handed alpha
Helix 28
28
A
691 709Right-handed alpha
Helix 29
29
A
732 740Right-handed alpha
Helix 30
30
A
742 755Right-handed alpha
Helix 31
31
A
776 780Right-handed 310
Helix 32
32
A
782 788Right-handed 310
Helix 33
33
A
801 805Right-handed alpha
Helix 34
34
A
837 850Right-handed alpha
Helix 35
35
A
871 888Right-handed alpha
Helix 36
36
A
896 902Right-handed 310
Helix 37
37
A
903 919Right-handed alpha
Helix 38
38
A
924 954Right-handed alpha
Helix 39
39
A
962 969Right-handed alpha
Helix 40
40
A
971 986Right-handed alpha
Helix 41
41
A
986 991Right-handed alpha
Helix 42
42
A
998 1019Right-handed alpha
Helix 43
43
A
1025 1033Right-handed alpha
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There are 9 sheets in PDB entry 1OY8. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
855 858first strand
Strand 2
A
679 686anti-parallel
Strand 3
A
822 830anti-parallel
Strand 4
A
715 718anti-parallel
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There are 8 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
855 858first strand
Strand 2
A
679 686anti-parallel
Strand 3
A
822 830anti-parallel
Strand 4
A
815 819anti-parallel
Strand 5
A
77 83anti-parallel
Strand 6
A
87 93anti-parallel
Strand 7
A
42 48anti-parallel
Strand 8
A
128 131anti-parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
321 324first strand
Strand 2
A
136 144anti-parallel
Strand 3
A
284 293anti-parallel
Strand 4
A
172 177anti-parallel
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There are 8 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
321 324first strand
Strand 2
A
136 144anti-parallel
Strand 3
A
284 293anti-parallel
Strand 4
A
278 281anti-parallel
Strand 5
A
606 615anti-parallel
Strand 6
A
620 631anti-parallel
Strand 7
A
571 577anti-parallel
Strand 8
A
662 663anti-parallel
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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
266 272first strand
Strand 2
A
182 188anti-parallel
Strand 3
A
767 773parallel
Strand 4
A
757 764anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
218 219first strand
Strand 2
A
232 233anti-parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
250 254first strand
Strand 2
A
258 261anti-parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
725 729first strand
Strand 2
A
807 811anti-parallel
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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
790 792first strand
Strand 2
A
798 800anti-parallel
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