Analysis of interatomic Contacts of Structural Units in PDB entry:
1OY9


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1OY9 entry

There is 1 chain in PDB entry 1OY9 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 7LYS 1036
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 42 helices in PDB entry 1OY9. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
8 28Right-handed alpha
Helix 2
2
A
53 61Right-handed alpha
Helix 3
3
A
61 68Right-handed alpha
Helix 4
4
A
99 109Right-handed alpha
Helix 5
5
A
110 118Right-handed 310
Helix 6
6
A
119 124Right-handed alpha
Helix 7
7
A
152 159Right-handed alpha
Helix 8
8
A
162 169Right-handed alpha
Helix 9
9
A
189 195Right-handed alpha
Helix 10
10
A
199 208Right-handed alpha
Helix 11
11
A
242 247Right-handed alpha
Helix 12
12
A
262 265Right-handed alpha
Helix 13
13
A
299 311Right-handed alpha
Helix 14
14
A
313 317Right-handed 310
Helix 15
15
A
329 359Right-handed alpha
Helix 16
16
A
371 384Right-handed alpha
Helix 17
17
A
391 423Right-handed alpha
Helix 18
18
A
427 450Right-handed alpha
Helix 19
19
A
452 457Right-handed alpha
Helix 20
20
A
460 462Right-handed 310
Helix 21
21
A
463 496Right-handed alpha
Helix 22
22
A
513 525Right-handed alpha
Helix 23
23
A
525 537Right-handed alpha
Helix 24
24
A
538 558Right-handed alpha
Helix 25
25
A
583 600Right-handed alpha
Helix 26
26
A
643 656Right-handed alpha
Helix 27
27
A
691 709Right-handed alpha
Helix 28
28
A
732 740Right-handed alpha
Helix 29
29
A
742 755Right-handed alpha
Helix 30
30
A
776 781Right-handed 310
Helix 31
31
A
782 787Right-handed 310
Helix 32
32
A
800 804Right-handed alpha
Helix 33
33
A
837 849Right-handed alpha
Helix 34
34
A
871 888Right-handed alpha
Helix 35
35
A
896 901Right-handed alpha
Helix 36
36
A
903 919Right-handed alpha
Helix 37
37
A
924 951Right-handed alpha
Helix 38
38
A
963 969Right-handed alpha
Helix 39
39
A
971 986Right-handed alpha
Helix 40
40
A
986 991Right-handed alpha
Helix 41
41
A
998 1019Right-handed alpha
Helix 42
42
A
1025 1033Right-handed alpha
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There are 9 sheets in PDB entry 1OY9. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
77 79first strand
Strand 2
A
87 93anti-parallel
Strand 3
A
42 48anti-parallel
Strand 4
A
128 131anti-parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
81 83first strand
Strand 2
A
815 819anti-parallel
Strand 3
A
822 827anti-parallel
Strand 4
A
682 685anti-parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
172 177first strand
Strand 2
A
289 293anti-parallel
Strand 3
A
136 144anti-parallel
Strand 4
A
321 324anti-parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
266 272first strand
Strand 2
A
182 188anti-parallel
Strand 3
A
767 773parallel
Strand 4
A
757 764anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
250 254first strand
Strand 2
A
258 261anti-parallel
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There are 6 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
285 286first strand
Strand 2
A
278 280anti-parallel
Strand 3
A
611 613anti-parallel
Strand 4
A
624 628anti-parallel
Strand 5
A
573 577anti-parallel
Strand 6
A
662 663anti-parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
606 608first strand
Strand 2
A
630 631anti-parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
726 731first strand
Strand 2
A
805 810anti-parallel
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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
791 793first strand
Strand 2
A
797 799anti-parallel
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