Analysis of interatomic Contacts of Structural Units in PDB entry:
1OYD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1OYD entry

There is 1 chain in PDB entry 1OYD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 7LYS 1036
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 41 helices in PDB entry 1OYD. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
8 28Right-handed alpha
Helix 2
2
A
56 61Right-handed alpha
Helix 3
3
A
61 68Right-handed alpha
Helix 4
4
A
99 115Right-handed alpha
Helix 5
5
A
119 124Right-handed alpha
Helix 6
6
A
152 159Right-handed alpha
Helix 7
7
A
162 169Right-handed alpha
Helix 8
8
A
170 172Right-handed 310
Helix 9
9
A
189 195Right-handed alpha
Helix 10
10
A
199 211Right-handed alpha
Helix 11
11
A
242 248Right-handed alpha
Helix 12
12
A
262 265Right-handed alpha
Helix 13
13
A
329 359Right-handed alpha
Helix 14
14
A
371 384Right-handed alpha
Helix 15
15
A
391 423Right-handed alpha
Helix 16
16
A
427 454Right-handed alpha
Helix 17
17
A
460 462Right-handed 310
Helix 18
18
A
463 485Right-handed alpha
Helix 19
19
A
487 496Right-handed alpha
Helix 20
20
A
513 525Right-handed alpha
Helix 21
21
A
525 537Right-handed alpha
Helix 22
22
A
538 558Right-handed alpha
Helix 23
23
A
583 600Right-handed alpha
Helix 24
24
A
643 656Right-handed alpha
Helix 25
25
A
691 709Right-handed alpha
Helix 26
26
A
732 740Right-handed alpha
Helix 27
27
A
742 755Right-handed alpha
Helix 28
28
A
776 780Right-handed 310
Helix 29
29
A
782 787Right-handed 310
Helix 30
30
A
800 805Right-handed alpha
Helix 31
31
A
837 843Right-handed alpha
Helix 32
32
A
844 849Right-handed alpha
Helix 33
33
A
871 888Right-handed alpha
Helix 34
34
A
896 901Right-handed alpha
Helix 35
35
A
903 919Right-handed alpha
Helix 36
36
A
924 952Right-handed alpha
Helix 37
37
A
963 969Right-handed alpha
Helix 38
38
A
971 986Right-handed alpha
Helix 39
39
A
986 991Right-handed alpha
Helix 40
40
A
998 1019Right-handed alpha
Helix 41
41
A
1025 1033Right-handed alpha
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There are 8 sheets in PDB entry 1OYD. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
128 131first strand
Strand 2
A
42 48anti-parallel
Strand 3
A
87 93anti-parallel
Strand 4
A
77 83anti-parallel
Strand 5
A
815 819anti-parallel
Strand 6
A
822 827anti-parallel
Strand 7
A
682 685anti-parallel
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There are 12 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
321 324first strand
Strand 2
A
141 144anti-parallel
Strand 3
A
285 292anti-parallel
Strand 4
A
136 138anti-parallel
Strand 5
A
285 292anti-parallel
Strand 6
A
174 177anti-parallel
Strand 7
A
285 292anti-parallel
Strand 8
A
278 280anti-parallel
Strand 9
A
611 613anti-parallel
Strand 10
A
624 628anti-parallel
Strand 11
A
573 577anti-parallel
Strand 12
A
662 663anti-parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
266 272first strand
Strand 2
A
182 188anti-parallel
Strand 3
A
767 773parallel
Strand 4
A
757 764anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
218 219first strand
Strand 2
A
232 233anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
250 254first strand
Strand 2
A
258 261anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
606 608first strand
Strand 2
A
630 631anti-parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
725 729first strand
Strand 2
A
807 811anti-parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
791 793first strand
Strand 2
A
797 799anti-parallel
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