Analysis of interatomic Contacts of Structural Units in PDB entry:
1OYH


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1OYH entry

There are 2 chains in PDB entry 1OYH (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
I
VAL 5VAL 431
L
VAL 5CYS 430
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 28 helices in PDB entry 1OYH. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
1
I
11 15Right-handed 310
Helix 2
2
I
45 69Right-handed alpha
Helix 3
3
I
79 91Right-handed alpha
Helix 4
4
I
92 94Right-handed 310
Helix 5
5
I
95 106Right-handed alpha
Helix 6
6
I
107 111Right-handed 310
Helix 7
7
I
115 133Right-handed alpha
Helix 8
8
I
155 167Right-handed alpha
Helix 9
9
I
174 194Right-handed alpha
Helix 10
10
I
230 234Right-handed 310
Helix 11
11
I
264 266Right-handed 310
Helix 12
12
I
291 299Right-handed alpha
Helix 13
13
I
300 311Right-handed alpha
Helix 14
14
I
331 337Right-handed alpha
Helix 15
15
I
341 345Right-handed 310
Helix 16
16
I
416 418Right-handed 310
Helix 17
17
L
43 68Right-handed alpha
Helix 18
18
L
79 92Right-handed alpha
Helix 19
19
L
95 106Right-handed alpha
Helix 20
20
L
107 111Right-handed 310
Helix 21
21
L
115 132Right-handed alpha
Helix 22
22
L
155 166Right-handed alpha
Helix 23
23
L
178 194Right-handed alpha
Helix 24
24
L
230 234Right-handed 310
Helix 25
25
L
291 299Right-handed alpha
Helix 26
26
L
300 311Right-handed alpha
Helix 27
27
L
331 338Right-handed alpha
Helix 28
28
L
341 345Right-handed 310
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There are 9 sheets in PDB entry 1OYH. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
I
400 403first strand
Strand 2
I
312 321parallel
Strand 3
I
246 263anti-parallel
Strand 4
I
235 240anti-parallel
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There are 8 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
I
400 403first strand
Strand 2
I
312 321parallel
Strand 3
I
246 263anti-parallel
Strand 4
I
267 273anti-parallel
Strand 5
I
279 285anti-parallel
Strand 6
I
408 414anti-parallel
Strand 7
I
419 426anti-parallel
Strand 8
I
76 78anti-parallel
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There are 5 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
I
170 173first strand
Strand 2
I
140 149parallel
Strand 3
I
213 221anti-parallel
Strand 4
I
366 375parallel
Strand 5
I
323 330anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
I
152 154first strand
Strand 2
I
354 356anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
I
223 224first strand
Strand 2
I
379 380anti-parallel
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There are 4 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
I
387 390first strand
Strand 2
L
312 321parallel
Strand 3
L
246 262anti-parallel
Strand 4
L
235 240anti-parallel
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There are 8 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
I
387 390first strand
Strand 2
L
312 321parallel
Strand 3
L
246 262anti-parallel
Strand 4
L
268 273anti-parallel
Strand 5
L
279 285anti-parallel
Strand 6
L
408 414anti-parallel
Strand 7
L
419 426anti-parallel
Strand 8
L
76 78anti-parallel
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There are 5 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
L
323 330first strand
Strand 2
L
364 375anti-parallel
Strand 3
L
379 390anti-parallel
Strand 4
L
213 224anti-parallel
Strand 5
L
139 142anti-parallel
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There are 6 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
L
323 330first strand
Strand 2
L
364 375anti-parallel
Strand 3
L
379 390anti-parallel
Strand 4
L
213 224anti-parallel
Strand 5
L
145 149anti-parallel
Strand 6
L
169 173parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il