Analysis of interatomic Contacts of Structural Units in PDB entry:
1OYW


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1OYW entry

There is 1 chain in PDB entry 1OYW (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MSE 1VAL 516
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 26 helices in PDB entry 1OYW. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
8 20Right-handed alpha
Helix 2
2
A
29 39Right-handed alpha
Helix 3
3
A
49 64Right-handed alpha
Helix 4
4
A
74 88Right-handed alpha
Helix 5
5
A
100 113Right-handed alpha
Helix 6
6
A
122 127Right-handed alpha
Helix 7
7
A
130 136Right-handed alpha
Helix 8
8
A
147 152Right-handed 310
Helix 9
9
A
159 164Right-handed alpha
Helix 10
10
A
167 172Right-handed alpha
Helix 11
11
A
185 197Right-handed alpha
Helix 12
12
A
222 234Right-handed alpha
Helix 13
13
A
245 259Right-handed alpha
Helix 14
14
A
271 284Right-handed alpha
Helix 15
15
A
316 325Right-handed alpha
Helix 16
16
A
341 354Right-handed alpha
Helix 17
17
A
358 376Right-handed alpha
Helix 18
18
A
380 389Right-handed alpha
Helix 19
19
A
400 405Right-handed alpha
Helix 20
20
A
412 426Right-handed alpha
Helix 21
21
A
431 441Right-handed alpha
Helix 22
22
A
444 450Right-handed alpha
Helix 23
23
A
451 455Right-handed 310
Helix 24
24
A
465 479Right-handed alpha
Helix 25
25
A
486 489Right-handed 310
Helix 26
26
A
498 503Right-handed alpha
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There are 4 sheets in PDB entry 1OYW. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
92 95first strand
Strand 2
A
118 121parallel
Strand 3
A
67 71parallel
Strand 4
A
140 145parallel
Strand 5
A
177 181parallel
Strand 6
A
43 46parallel
Strand 7
A
202 205parallel
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There are 6 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
213 219first strand
Strand 2
A
334 340parallel
Strand 3
A
307 310parallel
Strand 4
A
239 242parallel
Strand 5
A
289 292parallel
Strand 6
A
263 266parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
409 411first strand
Strand 2
A
509 511anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
482 484first strand
Strand 2
A
492 494anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il