Analysis of interatomic Contacts of Structural Units in PDB entry:
1P01


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1P01 entry

There is 1 chain in PDB entry 1P01 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 15GLY 244
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 3 helices in PDB entry 1P01. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
55 59Right-handed 310
Helix 2
2
A
221 224Right-handed 310
Helix 3
3
A
231 238Right-handed alpha
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There are 3 sheets in PDB entry 1P01. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
113 120first strand
Strand 2
A
40 43first strand
Strand 3
A
30 33anti-parallel
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There are 8 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
83 93anti-parallel
Strand 2
A
103 108anti-parallel
Strand 3
A
49 54anti-parallel
Strand 4
A
240 241anti-parallel
Strand 5
A
135 140first strand
Strand 6
A
156 171anti-parallel
Strand 7
A
175 183anti-parallel
Strand 8
A
226 230anti-parallel
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There are 7 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
209 216anti-parallel
Strand 2
A
198 200anti-parallel
Strand 3
A
135 140anti-parallel
Strand 4

0 0first strand
Strand 5

0 0first strand
Strand 6

0 0first strand
Strand 7

0 0first strand
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il