Analysis of interatomic Contacts of Structural Units in PDB entry:
1P0D


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1P0D entry

There is 1 chain in PDB entry 1P0D (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 11PHE 382
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 18 helices in PDB entry 1P0D. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
55 62Right-handed alpha
Helix 2
2
A
70 77Right-handed alpha
Helix 3
3
A
79 86Right-handed alpha
Helix 4
4
A
88 94Right-handed alpha
Helix 5
5
A
104 112Right-handed alpha
Helix 6
6
A
136 148Right-handed alpha
Helix 7
7
A
164 188Right-handed alpha
Helix 8
8
A
189 196Right-handed alpha
Helix 9
9
A
207 222Right-handed alpha
Helix 10
10
A
236 248Right-handed alpha
Helix 11
11
A
249 251Right-handed 310
Helix 12
12
A
264 273Right-handed alpha
Helix 13
13
A
282 291Right-handed alpha
Helix 14
14
A
304 308Right-handed 310
Helix 15
15
A
320 326Right-handed alpha
Helix 16
16
A
327 337Right-handed alpha
Helix 17
17
A
339 367Right-handed alpha
Helix 18
18
A
369 382Right-handed alpha
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There are 4 sheets in PDB entry 1P0D. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
14 22first strand
Strand 2
A
25 32anti-parallel
Strand 3
A
35 39anti-parallel
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There are 9 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
41 43first strand
Strand 2
A
278 280parallel
Strand 3
A
257 259parallel
Strand 4
A
225 228parallel
Strand 5
A
197 202parallel
Strand 6
A
151 153parallel
Strand 7
A
99 101parallel
Strand 8
A
67 69parallel
Strand 9
A
45 46parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
116 117first strand
Strand 2
A
122 123anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
292 293first strand
Strand 2
A
300 301anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il