Analysis of interatomic Contacts of Structural Units in PDB entry:
1P43


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1P43 entry

There are 2 chains in PDB entry 1P43 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 1LEU 436
B
 ALA 501LEU 936
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 41 helices in PDB entry 1P43. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
55 59Right-handed 310
Helix 2
2
A
61 71Right-handed alpha
Helix 3
3
A
71 80Right-handed alpha
Helix 4
4
A
85 98Right-handed alpha
Helix 5
5
A
106 126Right-handed alpha
Helix 6
6
A
128 137Right-handed alpha
Helix 7
7
A
157 160Right-handed 310
Helix 8
8
A
178 202Right-handed alpha
Helix 9
9
A
203 207Right-handed 310
Helix 10
10
A
220 235Right-handed alpha
Helix 11
11
A
248 251Right-handed 310
Helix 12
12
A
268 272Right-handed 310
Helix 13
13
A
274 289Right-handed alpha
Helix 14
14
A
302 311Right-handed alpha
Helix 15
15
A
326 336Right-handed alpha
Helix 16
16
A
345 350Right-handed alpha
Helix 17
17
A
351 365Right-handed alpha
Helix 18
18
A
381 390Right-handed alpha
Helix 19
19
A
402 420Right-handed alpha
Helix 20
20
A
427 430Right-handed 310
Helix 21
21
A
432 436Right-handed 310
Helix 22
22
B
555 559Right-handed 310
Helix 23
23
B
561 571Right-handed alpha
Helix 24
24
B
571 580Right-handed alpha
Helix 25
25
B
585 598Right-handed alpha
Helix 26
26
B
606 625Right-handed alpha
Helix 27
27
B
628 638Right-handed alpha
Helix 28
28
B
657 660Right-handed 310
Helix 29
29
B
678 702Right-handed alpha
Helix 30
30
B
702 707Right-handed alpha
Helix 31
31
B
720 735Right-handed alpha
Helix 32
32
B
748 751Right-handed 310
Helix 33
33
B
768 772Right-handed 310
Helix 34
34
B
774 789Right-handed alpha
Helix 35
35
B
802 811Right-handed alpha
Helix 36
36
B
826 837Right-handed alpha
Helix 37
37
B
845 850Right-handed alpha
Helix 38
38
B
851 865Right-handed alpha
Helix 39
39
B
881 890Right-handed alpha
Helix 40
40
B
902 920Right-handed alpha
Helix 41
41
B
927 936Right-handed 310
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There are 8 sheets in PDB entry 1P43. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
4 11first strand
Strand 2
A
17 25anti-parallel
Strand 3
A
28 33anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
144 146first strand
Strand 2
A
423 425parallel
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There are 9 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
148 149first strand
Strand 2
A
394 396parallel
Strand 3
A
368 372parallel
Strand 4
A
341 344parallel
Strand 5
A
316 319parallel
Strand 6
A
291 295parallel
Strand 7
A
242 246parallel
Strand 8
A
168 172anti-parallel
Strand 9
A
151 155anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
253 254first strand
Strand 2
A
257 258anti-parallel
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There are 3 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
504 511first strand
Strand 2
B
517 525anti-parallel
Strand 3
B
528 533anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
644 646first strand
Strand 2
B
923 925parallel
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There are 9 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
648 649first strand
Strand 2
B
894 896parallel
Strand 3
B
868 872parallel
Strand 4
B
841 844parallel
Strand 5
B
816 819parallel
Strand 6
B
791 795parallel
Strand 7
B
742 746parallel
Strand 8
B
668 672anti-parallel
Strand 9
B
651 655anti-parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
753 754first strand
Strand 2
B
757 758anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il