Analysis of interatomic Contacts of Structural Units in PDB entry:
1PD0


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1PD0 entry

There are 2 chains in PDB entry 1PD0 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
ARG 133LYS 926
B
THR 234THR 243
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 30 helices in PDB entry 1PD0. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
1
A
144 146Right-handed 310
Helix 2
2
A
150 156Right-handed 310
Helix 3
3
A
164 168Right-handed 310
Helix 4
4
A
172 176Right-handed 310
Helix 5
5
A
192 200Right-handed alpha
Helix 6
6
A
263 268Right-handed 310
Helix 7
7
A
276 279Right-handed 310
Helix 8
8
A
280 285Right-handed alpha
Helix 9
9
A
293 297Right-handed 310
Helix 10
10
A
313 320Right-handed alpha
Helix 11
11
A
320 331Right-handed alpha
Helix 12
12
A
361 365Right-handed 310
Helix 13
13
A
399 414Right-handed alpha
Helix 14
14
A
423 436Right-handed alpha
Helix 15
15
A
481 491Right-handed alpha
Helix 16
16
A
508 518Right-handed alpha
Helix 17
17
A
533 550Right-handed alpha
Helix 18
18
A
638 645Right-handed alpha
Helix 19
19
A
647 666Right-handed alpha
Helix 20
20
A
667 690Right-handed alpha
Helix 21
21
A
706 708Right-handed 310
Helix 22
22
A
709 719Right-handed alpha
Helix 23
23
A
729 743Right-handed alpha
Helix 24
24
A
744 753Right-handed alpha
Helix 25
25
A
790 794Right-handed 310
Helix 26
26
A
817 826Right-handed alpha
Helix 27
27
A
829 833Right-handed 310
Helix 28
28
A
846 860Right-handed alpha
Helix 29
29
A
888 901Right-handed alpha
Helix 30
30
A
912 924Right-handed alpha
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There are 8 sheets in PDB entry 1PD0. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
140 142first strand
Strand 2
A
702 704anti-parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
182 184first strand
Strand 2
A
204 207anti-parallel
Strand 3
A
594 600anti-parallel
Strand 4
A
566 572anti-parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
189 190first strand
Strand 2
A
624 636parallel
Strand 3
A
287 291anti-parallel
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There are 5 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
189 190first strand
Strand 2
A
624 636parallel
Strand 3
A
608 619anti-parallel
Strand 4
A
553 562anti-parallel
Strand 5
A
583 588anti-parallel
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There are 3 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
243 245first strand
Strand 2
A
250 252anti-parallel
Strand 3
A
259 261anti-parallel
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There are 7 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
374 376first strand
Strand 2
A
354 358anti-parallel
Strand 3
A
347 350anti-parallel
Strand 4
A
306 311parallel
Strand 5
A
440 446parallel
Strand 6
A
495 503parallel
Strand 7
A
523 527parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
344 345first strand
Strand 2
A
394 395anti-parallel
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There are 5 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
755 758first strand
Strand 2
A
799 803anti-parallel
Strand 3
A
808 812anti-parallel
Strand 4
A
871 875parallel
Strand 5
A
836 837anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il