Analysis of interatomic Contacts of Structural Units in PDB entry:
1PDY


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1PDY entry

There is 1 chain in PDB entry 1PDY (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 1SER 433
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 19 helices in PDB entry 1PDY. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
55 58Right-handed 310
Helix 2
2
A
62 70Right-handed alpha
Helix 3
3
A
72 79Right-handed alpha
Helix 4
4
A
86 97Right-handed alpha
Helix 5
5
A
107 124Right-handed alpha
Helix 6
6
A
129 136Right-handed alpha
Helix 7
7
A
155 157Right-handed 310
Helix 8
8
A
177 199Right-handed alpha
Helix 9
9
A
201 204Right-handed 310
Helix 10
10
A
219 233Right-handed alpha
Helix 11
11
A
247 250Right-handed 310
Helix 12
12
A
274 287Right-handed alpha
Helix 13
13
A
302 310Right-handed alpha
Helix 14
14
A
326 334Right-handed alpha
Helix 15
15
A
345 348Right-handed alpha
Helix 16
16
A
351 364Right-handed alpha
Helix 17
17
A
381 388Right-handed alpha
Helix 18
18
A
402 421Right-handed alpha
Helix 19
19
A
426 431Right-handed 310
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There are 3 sheets in PDB entry 1PDY. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
4 11first strand
Strand 2
A
17 25anti-parallel
Strand 3
A
28 33anti-parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
148 153first strand
Strand 2
A
166 170anti-parallel
Strand 3
A
240 244anti-parallel
Strand 4
A
290 294parallel
Strand 5
A
315 317parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
340 343first strand
Strand 2
A
367 370parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il