Analysis of interatomic Contacts of Structural Units in PDB entry:
1PFV


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1PFV entry

There is 1 chain in PDB entry 1PFV (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 4VAL 550
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 25 helices in PDB entry 1PFV. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
21 41Right-handed alpha
Helix 2
2
A
55 66Right-handed alpha
Helix 3
3
A
68 87Right-handed alpha
Helix 4
4
A
99 116Right-handed alpha
Helix 5
5
A
137 139Right-handed 310
Helix 6
6
A
166 170Right-handed 310
Helix 7
7
A
194 196Right-handed 310
Helix 8
8
A
197 206Right-handed alpha
Helix 9
9
A
211 225Right-handed alpha
Helix 10
10
A
251 272Right-handed alpha
Helix 11
11
A
275 282Right-handed alpha
Helix 12
12
A
297 303Right-handed alpha
Helix 13
13
A
303 312Right-handed alpha
Helix 14
14
A
342 350Right-handed alpha
Helix 15
15
A
351 363Right-handed alpha
Helix 16
16
A
373 385Right-handed alpha
Helix 17
17
A
389 404Right-handed alpha
Helix 18
18
A
414 424Right-handed alpha
Helix 19
19
A
424 434Right-handed alpha
Helix 20
20
A
436 459Right-handed alpha
Helix 21
21
A
459 464Right-handed alpha
Helix 22
22
A
469 491Right-handed alpha
Helix 23
23
A
495 507Right-handed alpha
Helix 24
24
A
512 517Right-handed 310
Helix 25
25
A
535 550Right-handed alpha
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There are 5 sheets in PDB entry 1PFV. Click on sheet of interest to get list of strands forming it: A, B, C, D, E,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
93 96first strand
Strand 2
A
44 51parallel
Strand 3
A
6 11parallel
Strand 4
A
288 294parallel
Strand 5
A
319 323parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
134 135first strand
Strand 2
A
119 129anti-parallel
Strand 3
A
183 192anti-parallel
Strand 4
A
229 230anti-parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
153 154first strand
Strand 2
A
141 144anti-parallel
Strand 3
A
171 175anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
232 234first strand
Strand 2
A
248 250anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
326 328first strand
Strand 2
A
370 372parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il