Analysis of interatomic Contacts of Structural Units in PDB entry:
1PJQ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1PJQ entry


Note, this PDB entry contains modified residue(s) PHOSPHOSERINE (SEP) . This residue is treated as heterogroup (ligand) both in the PDB entry and in LPC/CSU analysis.

There are 4 chains in PDB entry 1PJQ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1SER 127
A
 GLY 129HIS 457
B
 MET 1SER 127
B
 GLY 129HIS 457
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 41 helices in PDB entry 1PJQ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
21 34Right-handed alpha
Helix 2
2
A
46 54Right-handed alpha
Helix 3
3
A
66 71Right-handed 310
Helix 4
4
A
82 96Right-handed alpha
Helix 5
5
A
132 147Right-handed alpha
Helix 6
6
A
150 169Right-handed alpha
Helix 7
7
A
171 183Right-handed alpha
Helix 8
8
A
185 194Right-handed alpha
Helix 9
9
A
196 209Right-handed alpha
Helix 10
10
A
227 231Right-handed 310
Helix 11
11
A
232 242Right-handed alpha
Helix 12
12
A
252 257Right-handed alpha
Helix 13
13
A
279 292Right-handed alpha
Helix 14
14
A
309 315Right-handed alpha
Helix 15
15
A
331 340Right-handed alpha
Helix 16
16
A
367 373Right-handed alpha
Helix 17
17
A
386 397Right-handed alpha
Helix 18
18
A
425 430Right-handed alpha
Helix 19
19
A
443 450Right-handed 310
Helix 20
20
B
21 34Right-handed alpha
Helix 21
21
B
46 54Right-handed alpha
Helix 22
22
B
66 71Right-handed 310
Helix 23
23
B
82 96Right-handed alpha
Helix 24
24
B
132 147Right-handed alpha
Helix 25
25
B
150 158Right-handed alpha
Helix 26
26
B
161 169Right-handed alpha
Helix 27
27
B
171 183Right-handed alpha
Helix 28
28
B
185 195Right-handed alpha
Helix 29
29
B
196 210Right-handed alpha
Helix 30
30
B
227 231Right-handed 310
Helix 31
31
B
232 240Right-handed alpha
Helix 32
32
B
252 257Right-handed alpha
Helix 33
33
B
278 292Right-handed alpha
Helix 34
34
B
311 316Right-handed alpha
Helix 35
35
B
331 341Right-handed alpha
Helix 36
36
B
367 372Right-handed alpha
Helix 37
37
B
383 385Right-handed 310
Helix 38
38
B
386 396Right-handed alpha
Helix 39
39
B
425 431Right-handed alpha
Helix 40
40
B
443 446Right-handed 310
Helix 41
41
B
447 452Right-handed alpha
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There are 7 sheets in PDB entry 1PJQ. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
111 112first strand
Strand 2
B
4 8anti-parallel
Strand 3
A
4 8anti-parallel
Strand 4
B
111 112anti-parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
59 62first strand
Strand 2
A
37 42parallel
Strand 3
A
14 18parallel
Strand 4
A
75 78parallel
Strand 5
A
99 102parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
115 119first strand
Strand 2
A
122 127anti-parallel
Strand 3
B
122 127anti-parallel
Strand 4
B
115 119anti-parallel
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There are 5 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
264 267first strand
Strand 2
A
244 247parallel
Strand 3
A
295 300parallel
Strand 4
A
217 222parallel
Strand 5
A
324 327parallel
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There are 10 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
417 422first strand
Strand 2
A
404 409anti-parallel
Strand 3
A
437 441anti-parallel
Strand 4
A
376 380anti-parallel
Strand 5
A
352 356parallel
Strand 6
B
352 357anti-parallel
Strand 7
B
377 381parallel
Strand 8
B
437 441anti-parallel
Strand 9
B
404 409anti-parallel
Strand 10
B
417 422anti-parallel
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There are 5 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
59 62first strand
Strand 2
B
37 42parallel
Strand 3
B
14 18parallel
Strand 4
B
75 78parallel
Strand 5
B
99 102parallel
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There are 5 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
264 267first strand
Strand 2
B
244 247parallel
Strand 3
B
295 301parallel
Strand 4
B
217 224parallel
Strand 5
B
324 327parallel
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