Analysis of interatomic Contacts of Structural Units in PDB entry:
1PMO

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 1PMO entry

There are 6 chains in PDB entry 1PMO (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLU 12	THR 466
B	LYS 4	THR 466
C	LEU 13	THR 466
D	LEU 13	THR 466
E	LYS 4	THR 466
F	LEU 13	THR 466

There are101 helices in PDB entry 1PMO. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	38	50	Right-handed alpha
Helix 2	2	A	51	53	Right-handed 310
Helix 3	3	A	69	80	Right-handed alpha
Helix 4	4	A	90	108	Right-handed alpha
Helix 5	5	A	125	148	Right-handed alpha
Helix 6	6	A	163	173	Right-handed alpha
Helix 7	7	A	190	198	Right-handed alpha
Helix 8	8	A	219	235	Right-handed alpha
Helix 9	9	A	246	249	Right-handed 310
Helix 10	10	A	250	255	Right-handed alpha
Helix 11	11	A	291	295	Right-handed 310
Helix 12	12	A	296	300	Right-handed 310
Helix 13	13	A	321	358	Right-handed alpha
Helix 14	14	A	391	401	Right-handed alpha
Helix 15	15	A	430	451	Right-handed alpha
Helix 16	16	A	452	455	Right-handed 310
Helix 17	17	B	38	50	Right-handed alpha
Helix 18	18	B	51	53	Right-handed 310
Helix 19	19	B	69	80	Right-handed alpha
Helix 20	20	B	90	108	Right-handed alpha
Helix 21	21	B	125	148	Right-handed alpha
Helix 22	22	B	163	173	Right-handed alpha
Helix 23	23	B	190	198	Right-handed alpha
Helix 24	24	B	219	235	Right-handed alpha
Helix 25	25	B	246	249	Right-handed 310
Helix 26	26	B	250	255	Right-handed alpha
Helix 27	27	B	291	295	Right-handed 310
Helix 28	28	B	296	300	Right-handed 310
Helix 29	29	B	321	358	Right-handed alpha
Helix 30	30	B	391	401	Right-handed alpha
Helix 31	31	B	412	416	Right-handed 310
Helix 32	32	B	430	451	Right-handed alpha
Helix 33	33	B	452	455	Right-handed 310
Helix 34	34	C	38	50	Right-handed alpha
Helix 35	35	C	51	53	Right-handed 310
Helix 36	36	C	69	80	Right-handed alpha
Helix 37	37	C	90	108	Right-handed alpha
Helix 38	38	C	125	147	Right-handed alpha
Helix 39	39	C	163	173	Right-handed alpha
Helix 40	40	C	190	198	Right-handed alpha
Helix 41	41	C	219	235	Right-handed alpha
Helix 42	42	C	246	249	Right-handed 310
Helix 43	43	C	250	255	Right-handed alpha
Helix 44	44	C	291	295	Right-handed 310
Helix 45	45	C	296	300	Right-handed 310
Helix 46	46	C	321	358	Right-handed alpha
Helix 47	47	C	391	401	Right-handed alpha
Helix 48	48	C	412	417	Right-handed 310
Helix 49	49	C	430	451	Right-handed alpha
Helix 50	50	C	452	455	Right-handed 310
Helix 51	51	D	38	50	Right-handed alpha
Helix 52	52	D	51	53	Right-handed 310
Helix 53	53	D	69	80	Right-handed alpha
Helix 54	54	D	90	108	Right-handed alpha
Helix 55	55	D	125	148	Right-handed alpha
Helix 56	56	D	163	173	Right-handed alpha
Helix 57	57	D	190	198	Right-handed alpha
Helix 58	58	D	219	235	Right-handed alpha
Helix 59	59	D	246	249	Right-handed 310
Helix 60	60	D	250	255	Right-handed alpha
Helix 61	61	D	291	295	Right-handed 310
Helix 62	62	D	296	300	Right-handed 310
Helix 63	63	D	321	358	Right-handed alpha
Helix 64	64	D	391	401	Right-handed alpha
Helix 65	65	D	414	417	Right-handed 310
Helix 66	66	D	430	451	Right-handed alpha
Helix 67	67	D	452	455	Right-handed 310
Helix 68	68	E	38	50	Right-handed alpha
Helix 69	69	E	51	53	Right-handed 310
Helix 70	70	E	69	80	Right-handed alpha
Helix 71	71	E	90	108	Right-handed alpha
Helix 72	72	E	125	148	Right-handed alpha
Helix 73	73	E	163	173	Right-handed alpha
Helix 74	74	E	190	198	Right-handed alpha
Helix 75	75	E	219	235	Right-handed alpha
Helix 76	76	E	246	249	Right-handed 310
Helix 77	77	E	250	255	Right-handed alpha
Helix 78	78	E	291	295	Right-handed 310
Helix 79	79	E	296	300	Right-handed 310
Helix 80	80	E	321	358	Right-handed alpha
Helix 81	81	E	391	401	Right-handed alpha
Helix 82	82	E	412	416	Right-handed 310
Helix 83	83	E	430	451	Right-handed alpha
Helix 84	84	E	452	455	Right-handed 310
Helix 85	85	F	38	50	Right-handed alpha
Helix 86	86	F	51	53	Right-handed 310
Helix 87	87	F	69	80	Right-handed alpha
Helix 88	88	F	90	108	Right-handed alpha
Helix 89	89	F	125	148	Right-handed alpha
Helix 90	90	F	163	173	Right-handed alpha
Helix 91	91	F	190	198	Right-handed alpha
Helix 92	92	F	219	235	Right-handed alpha
Helix 93	93	F	246	249	Right-handed 310
Helix 94	94	F	250	255	Right-handed alpha
Helix 95	95	F	291	295	Right-handed 310
Helix 96	96	F	296	300	Right-handed 310
Helix 97	97	F	321	358	Right-handed alpha
Helix 98	98	F	391	401	Right-handed alpha
Helix 99	99	F	412	416	Right-handed 310
Helix 100	100	F	430	451	Right-handed alpha
Helix 101	101	F	452	455	Right-handed 310

There are 30 sheets in PDB entry 1PMO. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X, Y, Z, AA, AB, AC, AD,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	14	15	first strand
Strand 2	A	20	21	anti-parallel

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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	119	123	first strand
Strand 2	A	285	289	anti-parallel
Strand 3	A	267	273	anti-parallel
Strand 4	A	240	243	parallel

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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	176	179	first strand
Strand 2	A	156	159	parallel
Strand 3	A	202	206	parallel

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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	301	305	first strand
Strand 2	A	308	312	anti-parallel

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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	363	368	first strand
Strand 2	A	377	382	anti-parallel
Strand 3	A	419	424	anti-parallel
Strand 4	A	408	410	anti-parallel

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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	14	15	first strand
Strand 2	B	20	21	anti-parallel

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There are 4 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	119	123	first strand
Strand 2	B	285	289	anti-parallel
Strand 3	B	267	273	anti-parallel
Strand 4	B	240	243	parallel

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There are 3 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	176	179	first strand
Strand 2	B	156	159	parallel
Strand 3	B	202	206	parallel

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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	301	303	first strand
Strand 2	B	310	312	anti-parallel

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There are 4 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	363	368	first strand
Strand 2	B	377	382	anti-parallel
Strand 3	B	419	424	anti-parallel
Strand 4	B	408	410	anti-parallel

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There are 2 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	14	15	first strand
Strand 2	C	20	21	anti-parallel

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There are 4 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	119	123	first strand
Strand 2	C	285	289	anti-parallel
Strand 3	C	267	273	anti-parallel
Strand 4	C	240	243	parallel

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There are 3 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	176	179	first strand
Strand 2	C	156	159	parallel
Strand 3	C	202	206	parallel

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There are 2 strands in N sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	301	305	first strand
Strand 2	C	308	312	anti-parallel

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There are 4 strands in O sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	363	368	first strand
Strand 2	C	377	382	anti-parallel
Strand 3	C	419	424	anti-parallel
Strand 4	C	408	410	anti-parallel

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There are 2 strands in P sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	14	15	first strand
Strand 2	D	20	21	anti-parallel

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There are 4 strands in Q sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	119	123	first strand
Strand 2	D	285	289	anti-parallel
Strand 3	D	267	273	anti-parallel
Strand 4	D	240	243	parallel

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There are 3 strands in R sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	176	179	first strand
Strand 2	D	156	159	parallel
Strand 3	D	202	206	parallel

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There are 2 strands in S sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	301	303	first strand
Strand 2	D	310	312	anti-parallel

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There are 4 strands in T sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	363	368	first strand
Strand 2	D	377	382	anti-parallel
Strand 3	D	419	424	anti-parallel
Strand 4	D	408	410	anti-parallel

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There are 2 strands in U sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	14	15	first strand
Strand 2	E	20	21	anti-parallel

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There are 4 strands in V sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	119	123	first strand
Strand 2	E	285	289	anti-parallel
Strand 3	E	267	273	anti-parallel
Strand 4	E	240	243	parallel

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There are 3 strands in W sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	176	179	first strand
Strand 2	E	156	159	parallel
Strand 3	E	202	206	parallel

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There are 2 strands in X sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	301	305	first strand
Strand 2	E	308	312	anti-parallel

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There are 4 strands in Y sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	363	368	first strand
Strand 2	E	377	382	anti-parallel
Strand 3	E	419	424	anti-parallel
Strand 4	E	408	410	anti-parallel

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There are 2 strands in Z sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	14	15	first strand
Strand 2	F	20	21	anti-parallel

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There are 4 strands in AA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	119	123	first strand
Strand 2	F	285	289	anti-parallel
Strand 3	F	267	273	anti-parallel
Strand 4	F	240	243	parallel

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There are 3 strands in AB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	176	179	first strand
Strand 2	F	156	159	parallel
Strand 3	F	202	206	parallel

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There are 2 strands in AC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	301	303	first strand
Strand 2	F	310	312	anti-parallel

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There are 4 strands in AD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	363	368	first strand
Strand 2	F	377	382	anti-parallel
Strand 3	F	419	424	anti-parallel
Strand 4	F	408	410	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 1PMO

Analysis of interatomic Contacts of Structural Units in PDB entry:
1PMO