Analysis of interatomic Contacts of Structural Units in PDB entry:
1POV


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1POV entry

There are 3 chains in PDB entry 1POV (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
0
 GLY 2GLN 341
1
 GLN 68TYR 302
3
 GLY 1GLN 238
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 12 helices in PDB entry 1POV. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
6
0
153 155Right-handed 310
Helix 2
7
0
159 167Right-handed alpha
Helix 3
8
0
214 217Right-handed alpha
Helix 4
9
0
256 261Right-handed 310
Helix 5
11
0
289 293Right-handed alpha
Helix 6
2
1
77 81Right-handed alpha
Helix 7
3
1
117 124Right-handed alpha
Helix 8
4
1
221 226Right-handed alpha
Helix 9
12
3
42 49Right-handed alpha
Helix 10
17
3
99 106Right-handed alpha
Helix 11
19
3
145 150Right-handed alpha
Helix 12
20
3
183 185Right-handed 310
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There are 12 sheets in PDB entry 1POV. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
0
4 7first strand
Strand 2
0
26 29anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
0
84 87first strand
Strand 2
0
90 93anti-parallel
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There are 5 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
0
100 102first strand
Strand 2
0
274 279parallel
Strand 3
0
174 180anti-parallel
Strand 4
0
319 325anti-parallel
Strand 5
0
132 134anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
0
138 141first strand
Strand 2
0
315 318anti-parallel
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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
0
147 151first strand
Strand 2
0
296 304anti-parallel
Strand 3
0
190 197anti-parallel
Strand 4
0
264 268anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
0
170 172first strand
Strand 2
0
328 330anti-parallel
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There are 4 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
1
106 109first strand
Strand 2
1
239 244anti-parallel
Strand 3
1
154 160anti-parallel
Strand 4
1
182 186anti-parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
1
127 129first strand
Strand 2
1
267 269anti-parallel
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There are 4 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
1
192 196first strand
Strand 2
1
131 142anti-parallel
Strand 3
1
253 264anti-parallel
Strand 4
1
85 94anti-parallel
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There are 4 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
3
70 73first strand
Strand 2
3
207 216anti-parallel
Strand 3
3
114 120anti-parallel
Strand 4
3
163 168anti-parallel
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There are 4 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
3
83 86first strand
Strand 2
3
189 194anti-parallel
Strand 3
3
129 135anti-parallel
Strand 4
3
152 157anti-parallel
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There are 2 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
3
109 111first strand
Strand 2
3
221 223anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il